hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-01042197/chunk_1/iprscan-20080807-01042197.nocrc
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Query sequence: aj00333
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 445.1   3.6e-129   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6      61   146 ..     1   121 []    26.4    0.004
SM00112    2/6     170   255 ..     1   121 []    79.3  4.7e-19
SM00112    3/6     279   356 ..     1   121 []   103.8  1.9e-26
SM00112    4/6     380   461 ..     1   121 []    96.7  2.8e-24
SM00112    5/6     485   571 ..     1   121 []    93.6  2.4e-23
SM00112    6/6     602   683 ..     1   121 []    45.3  7.9e-09

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 61 to 146: score 26.4, E = 0.004
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.............lFsId
                      v+   a +              + +s+ + ++++ + ++++++F++ 
     aj00333    61    VVGNLATD--------------LGFSVQElptrklrvssekpYFTVS 93   

                   petGtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgG
                   +e+G           ++ ++ +LDREe+++k+     +   L+ eA+  +
     aj00333    94 AESG-----------ELLVSSRLDREEICGKK-----PACALEFEAVAEN 127  

                   gpppgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                           v+v+++D+ND+ P   
     aj00333   128 ------------------PLNFYHVNVEIEDINDHTP    146  

SM00112: domain 2 of 6, from 170 to 255: score 79.3, E = 4.7e-19
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                       +A DaD g    N+        +Y ++ +++ +l   +++ G ++p
     aj00333   170    EVAEDADIG---LNSL------QKYKLSLnpsfsLIIKEKQDGSKYP 207  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          ++ + k+LDRE+q         s ++L+ +A DgG pp     
     aj00333   208 -------ELALEKTLDREQQ---------SYHRLVLTALDGGHPP----- 236  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             ls+t++++++V+D NDN+P   
     aj00333   237 ----------LSGTTELRIQVTDANDNPP    255  

SM00112: domain 3 of 6, from 279 to 356: score 103.8, E = 1.9e-26
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL
                      vsAtD D+g    N++      +tYs+ ++++ Fs+++++G      
     aj00333   279    VSATDQDEG---INSE------ITYSFYRtgqIFSLNSKSG------ 310  

                   vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt
                        +itt+k LD+Ee+         +eY+++ve +DgGg         
     aj00333   311 -----EITTQKKLDFEET---------KEYSMVVEGRDGGG--------- 337  

                   rksqqtpplsstatvtvtVlDvNDNaP<-*
                           l +++tv ++++D+NDN P   
     aj00333   338 --------LVAQCTVEINIQDENDNSP    356  

SM00112: domain 4 of 6, from 380 to 461: score 96.7, E = 2.8e-24
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      ++ +D Dsg   eNg+      v +++ ++ +F+I +++ +      
     aj00333   380    IKIHDQDSG---ENGE------VNCQLQGevPFKIISSSKN------ 411  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                      + ++t ++LDRE++         +eY++t++AtD+G pp        
     aj00333   412 --SYKLVTDGTLDREQT---------PEYNVTITATDRGKPP-------- 442  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          lss+ +v+ ++ DvNDNaP   
     aj00333   443 -------LSSSISVILHIRDVNDNAP    461  

SM00112: domain 5 of 6, from 485 to 571: score 93.6, E = 2.4e-23
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      v A+D+D g    Ng+      v+Ysi  ++ ++    ++ s+ +++
     aj00333   485    VCASDLDLG---LNGQ------VSYSIMAsdleplalasYVSMSAQS 522  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G           ++++++++D+E+           +++Lt +A+D+G+p 
     aj00333   523 G-----------VVFAQRAFDYEQL---------RTFELTLQARDQGSPA 552  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  ls++++++v V D NDNaP   
     aj00333   553 ---------------LSANVSLRVLVGDRNDNAP    571  

SM00112: domain 6 of 6, from 602 to 683: score 45.3, E = 7.9e-09
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v+A+DaDsg   +N++      ++Y++l+ ++++lFs+  +tG    
     aj00333   602    VVAVDADSG---HNAW------LSYHVLQasepgLFSLGLRTG---- 635  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          +++t+++L   +          ++ +L v ++DgG+pp     
     aj00333   636 -------EVRTARALGDRDA---------ARQRLLVAVRDGGQPP----- 664  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             ls+tat++    D         
     aj00333   665 ----------LSATATLHLVFADSLQEVL    683  

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