hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-01095863/chunk_1/iprscan-20080807-01095863.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: aj00414 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 462.4 5.3e-136 1 PF07714.7.fs Protein tyrosine kinase 460.5 2e-135 1 PF01392.12.fs Fz domain 159.0 1.7e-53 1 PF01392.12.ls Fz domain 160.9 3e-45 1 PF00051.9.fs Kringle domain 122.0 2.9e-36 1 PF00051.9.ls Kringle domain 123.9 4.3e-34 1 PF00069.15.fs Protein kinase domain 99.2 4.6e-28 2 PF00069.15.ls Protein kinase domain 102.4 1.2e-27 1 PF07679.6.fs Immunoglobulin I-set domain 79.2 1.7e-22 1 PF07679.6.ls Immunoglobulin I-set domain 81.1 3.2e-21 1 PF00047.15.fs Immunoglobulin domain 41.5 1.2e-10 1 PF00047.15.ls Immunoglobulin domain 43.4 7.1e-10 1 PF07686.7.fs Immunoglobulin V-set domain 26.7 4.5e-07 1 PF07686.7.ls Immunoglobulin V-set domain 27.5 4.5e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07686.7.ls 1/1 10 129 .. 1 141 [] 27.5 4.5e-05 PF07679.6.fs 1/1 38 128 .. 1 96 [] 79.2 1.7e-22 PF07679.6.ls 1/1 38 128 .. 1 96 [] 81.1 3.2e-21 PF07686.7.fs 1/1 47 129 .. 24 141 .] 26.7 4.5e-07 PF00047.15.fs 1/1 52 113 .. 1 65 [] 41.5 1.2e-10 PF00047.15.ls 1/1 52 113 .. 1 65 [] 43.4 7.1e-10 PF01392.12.fs 1/1 144 277 .. 1 147 [] 159.0 1.7e-53 PF01392.12.ls 1/1 144 277 .. 1 147 [] 160.9 3e-45 PF00051.9.ls 1/1 292 370 .. 1 85 [] 123.9 4.3e-34 PF00051.9.fs 1/1 292 370 .. 1 85 [] 122.0 2.9e-36 PF07714.7.fs 1/1 449 722 .. 1 272 [] 460.5 2e-135 PF00069.15.ls 1/1 449 722 .. 1 287 [] 102.4 1.2e-27 PF00069.15.fs 1/2 449 612 .. 1 159 [. 68.6 2.3e-19 PF07714.7.ls 1/1 449 722 .. 1 272 [] 462.4 5.3e-136 PF00069.15.fs 2/2 632 713 .. 176 276 .. 30.6 1.4e-08 Alignments of top-scoring domains: PF07686.7.ls: domain 1 of 1, from 10 to 129: score 27.5, E = 4.5e-05 *->qsqvtqepprWGLLLASLfWp.t........................ +++v p p ++ ++++++ ++ ++ + ++ + aj00414 10 EVEVLD-PND----------PlGpldgqdgpiptlkgyflnflepvn 45 svtvaeGgsvtLpCtysGtfddsssssgtfsiyWyrq.qppgkgpeliii +t ++G++++L+C++ +++ ++ +++W +++ p + p+ ii aj00414 46 NITIVQGQTAILHCKVA---GNP----PP-NVRWLKNdAPVVQEPRRII- 86 syysyystsegngtvgerfkgrvtlsgnpskgdfsLtIsnlqlsDsGtYy + ++ g++ L+I++l D+G Y aj00414 87 -------------IRKTEY-GSR------------LRIQDLDTTDTGYYQ 110 CavsnsnelvfgggtrLtVl<-* C+ n+ + + + +L V+ aj00414 111 CVATNG-MKTITATGVLFVR 129 PF07679.6.fs: domain 1 of 1, from 38 to 128: score 79.2, E = 1.7e-22 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp F+ + ++++ G++a + CkV G+P+P V W+K++ p+ + aj00414 38 LNFLEPVNNITIVQGQTAILHCKVAGNPPPNVRWLKNDAPVVQ---E 81 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +r+ ++ ++ + ++L+I++ + D G Y CvAtN + +a+ L V aj00414 82 PRRIIIRKTE--YGSRLRIQDLDTTDTGYYQCVATNGMKTITATGVLFV 128 -* aj00414 - - PF07679.6.ls: domain 1 of 1, from 38 to 128: score 81.1, E = 3.2e-21 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp F+ + ++++ G++a + CkV G+P+P V W+K++ p+ + aj00414 38 LNFLEPVNNITIVQGQTAILHCKVAGNPPPNVRWLKNDAPVVQ---E 81 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +r+ ++ ++ + ++L+I++ + D G Y CvAtN + +a+ L V aj00414 82 PRRIIIRKTE--YGSRLRIQDLDTTDTGYYQCVATNGMKTITATGVLFV 128 -* aj00414 - - PF07686.7.fs: domain 1 of 1, from 47 to 129: score 26.7, E = 4.5e-07 *->vtvaeGgsvtLpCtysGtfddsssssgtfsiyWyrq.qppgkgpeli +t ++G++++L+C++ +++ ++ +++W +++ p + p+ i aj00414 47 ITIVQGQTAILHCKVA---GNP----PP-NVRWLKNdAPVVQEPRRI 85 iisyysyystsegngtvgerfkgrvtlsgnpskgdfsLtIsnlqlsDsGt i + ++ g++ L+I++l D+G aj00414 86 I--------------IRKTEY-GSR------------LRIQDLDTTDTGY 108 YyCavsnsnelvfgggtrLtVl<-* Y C+ n+ + + + +L V+ aj00414 109 YQCVATNG-MKTITATGVLFVR 129 PF00047.15.fs: domain 1 of 1, from 52 to 113: score 41.5, E = 1.2e-10 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L C v g+p+++v+Wl+n+ ++ ++ + + + + + + aj00414 52 GQTAILHCKV--AGNPPPNVRWLKNDApVVqEPRRIIIR--KTEYGS 94 tsLtitnvtpeDggtYtCvv<-* + L+i++++ D+g+Y Cv+ aj00414 95 R-LRIQDLDTTDTGYYQCVA 113 PF00047.15.ls: domain 1 of 1, from 52 to 113: score 43.4, E = 7.1e-10 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L C v g+p+++v+Wl+n+ ++ ++ + + + + + + aj00414 52 GQTAILHCKV--AGNPPPNVRWLKNDApVVqEPRRIIIR--KTEYGS 94 tsLtitnvtpeDggtYtCvv<-* + L+i++++ D+g+Y Cv+ aj00414 95 R-LRIQDLDTTDTGYYQCVA 113 PF01392.12.fs: domain 1 of 1, from 144 to 277: score 159.0, E = 1.7e-53 *->gertarCepiraipmCkglgYNhtlmPNlLgHetGsqkeaeleqEll ++++++C+p+r + C+++ +N+t++ +L++ q+e+e+ aj00414 144 YHEDGFCQPYR-GIACARFIGNRTIYVDSLQM----QGEIENR---- 181 llsqftpLlkvSlHL.pkCspdlrfFLCslyaPvCteglrepppipPCRs +++ ++++++S+HL+++Cs+++ + +C++ +P C+ + r+p+p+ +CR+ aj00414 182 -ITAAFTMIGTSTHLsDQCSQFAIPSFCHFVFPLCDARSRAPKPRELCRD 230 lCEavrelgCepvmeamEkkerrsnpfgfaWPesLdCskfPvped.deel CE ++++ C++++ + +rsnp +++++++++C+ +P+pe++d+++ aj00414 231 ECEVLESDLCRQEYTI-----ARSNPLILMRLQLPKCEALPMPESpDAAN 275 Cm<-* Cm aj00414 276 CM 277 PF01392.12.ls: domain 1 of 1, from 144 to 277: score 160.9, E = 3e-45 *->gertarCepiraipmCkglgYNhtlmPNlLgHetGsqkeaeleqEll ++++++C+p+r + C+++ +N+t++ +L++ q+e+e+ aj00414 144 YHEDGFCQPYR-GIACARFIGNRTIYVDSLQM----QGEIENR---- 181 llsqftpLlkvSlHL.pkCspdlrfFLCslyaPvCteglrepppipPCRs +++ ++++++S+HL+++Cs+++ + +C++ +P C+ + r+p+p+ +CR+ aj00414 182 -ITAAFTMIGTSTHLsDQCSQFAIPSFCHFVFPLCDARSRAPKPRELCRD 230 lCEavrelgCepvmeamEkkerrsnpfgfaWPesLdCskfPvped.deel CE ++++ C++++ + +rsnp +++++++++C+ +P+pe++d+++ aj00414 231 ECEVLESDLCRQEYTI-----ARSNPLILMRLQLPKCEALPMPESpDAAN 275 Cm<-* Cm aj00414 276 CM 277 PF00051.9.ls: domain 1 of 1, from 292 to 370: score 123.9, E = 4.3e-34 *->CyqGnGesYRGtvstTeSGapCQaWdsqtphrHskYtpenfpakgLg Cy G G+ YRGt+stT+SG++CQ+W+ q+ph H + fp g aj00414 292 CYNGSGMDYRGTASTTKSGHQCQPWALQHPHSHHL-SSTDFPELG-- 335 eGkHNYCRNPDGderGPWCYTltdprvrwEYCsdiprC<-* G+H+YCRNP G+ +GPWC+T + +vr E C d+p+C aj00414 336 -GGHAYCRNPGGQMEGPWCFT-QNKNVRMELC-DVPSC 370 PF00051.9.fs: domain 1 of 1, from 292 to 370: score 122.0, E = 2.9e-36 *->CyqGnGesYRGtvstTeSGapCQaWdsqtphrHskYtpenfpakgLg Cy G G+ YRGt+stT+SG++CQ+W+ q+ph H + fp g aj00414 292 CYNGSGMDYRGTASTTKSGHQCQPWALQHPHSHHL-SSTDFPELG-- 335 eGkHNYCRNPDGderGPWCYTltdprvrwEYCsdiprC<-* G+H+YCRNP G+ +GPWC+T + +vr E C d+p+C aj00414 336 -GGHAYCRNPGGQMEGPWCFT-QNKNVRMELC-DVPSC 370 PF07714.7.fs: domain 1 of 1, from 449 to 722: score 460.5, E = 2e-135 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei ++++++LGe FG+VykG+l+g+ ++++++ VA+KtLk+ +a + aj00414 449 VRFMEELGEDRFGKVYKGHLFGpAPGEQTQAVAIKTLKD-KAEGPL- 493 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd re+F +EA + +l +HpN+V+LlGv+tk ++P l +++ y+ +Gd aj00414 494 -REEFRHEAMLRARL-QHPNVVCLLGVVTK-DQP----LSMIFSYCSHGD 536 LldfLrkhr.............egrpLtlkdLlsfalQiAkGMeYLeskn L++fL ++++++ ++++++++ +++L +d ++ +QiA+GMeYL+s++ aj00414 537 LHEFLVMRSphsdvgstdddrtVKSALEPPDFVHLVAQIAAGMEYLSSHH 586 fvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWm vH DLA+RN+LV ++l VKIsD GL R +y dyY + g++ lP++Wm aj00414 587 VVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYY-KLLGNSLLPIRWM 635 APEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyed APE+++ygkF++ SD+WS+GV+LWE+f++G qP Y g sn++v+e++ ++ aj00414 636 APEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQP-YCGYSNQDVVEMI-RN 683 GyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* ++ Lp+P++CP+ +Y lM +CW+e P++RP+F++++++L aj00414 684 RQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRL 722 PF00069.15.ls: domain 1 of 1, from 449 to 722: score 102.4, E = 1.2e-27 *->yelleklGsGsfGtVykakh......kgtgkiVAvKiikkrkekskk ++ e lG+ fG+Vyk++ ++ ++ t+ VA+K++k + e + aj00414 449 VRFMEELGEDRFGKVYKGHLfgpapgEQTQA-VAIKTLKDKAEGP-L 493 dktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldL +++ r+ E+ + +rL+HpN+v l++v++ ++ l +++ yc +G dL aj00414 494 REEFRH--EAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHG----DL 537 fdyls......e....trrkgpll.fsedeakkialQilrgleYLHsngi +++l ++++++ +++++++++ + +++ + + + Qi+ g+eYL s+ + aj00414 538 HEFLVmrsphsDvgstDDDRTVKSaLEPPDFVHLVAQIAAGMEYLSSHHV 587 iHRDLKPeNILldnngvvdaflKiaDFGlAkkls.t.sss.lttfvGTpw +H DL N+L+ ++ +v Ki+D Gl + ++ + + l ++ aj00414 588 VHKDLATRNVLVYDKLNV----KISDLGLFREVYaAdYYKlLGNSLLPIR 633 YmAPEvllggngygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlq +mAPE ++ + + + +D+WS+Gv+l+e+++ G P++g s+ d + aj00414 634 WMAPEAIM-YGKFSIDSDIWSYGVVLWEVFSyGLQPYCGY---SnQDVVE 679 lirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskR +ir++ p + d+p + L+ c+n Ps+R aj00414 680 MIRNRQVLPCPDDCP-----------------AWVYALMIECWNEFPSRR 712 ltaeeilqHPwf<-* + +++i + aj00414 713 PRFKDIHSR--L 722 PF00069.15.fs: domain 1 of 2, from 449 to 612: score 68.6, E = 2.3e-19 *->yelleklGsGsfGtVykakh......kgtgkiVAvKiikkrkekskk ++ e lG+ fG+Vyk++ ++ ++ t+ VA+K++k + e + aj00414 449 VRFMEELGEDRFGKVYKGHLfgpapgEQTQA-VAIKTLKDKAEGP-L 493 dktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldL +++ r+ E+ + +rL+HpN+v l++v++ ++ l +++ yc +G dL aj00414 494 REEFRH--EAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHG----DL 537 fdyls......e....trrkgpll.fsedeakkialQilrgleYLHsngi +++l ++++++ +++++++++ + +++ + + + Qi+ g+eYL s+ + aj00414 538 HEFLVmrsphsDvgstDDDRTVKSaLEPPDFVHLVAQIAAGMEYLSSHHV 587 iHRDLKPeNILldnngvvdaflKiaDFGl<-* +H DL N+L+ ++ +v Ki+D Gl aj00414 588 VHKDLATRNVLVYDKLNV----KISDLGL 612 PF07714.7.ls: domain 1 of 1, from 449 to 722: score 462.4, E = 5.3e-136 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei ++++++LGe FG+VykG+l+g+ ++++++ VA+KtLk+ +a + aj00414 449 VRFMEELGEDRFGKVYKGHLFGpAPGEQTQAVAIKTLKD-KAEGPL- 493 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd re+F +EA + +l +HpN+V+LlGv+tk ++P l +++ y+ +Gd aj00414 494 -REEFRHEAMLRARL-QHPNVVCLLGVVTK-DQP----LSMIFSYCSHGD 536 LldfLrkhr.............egrpLtlkdLlsfalQiAkGMeYLeskn L++fL ++++++ ++++++++ +++L +d ++ +QiA+GMeYL+s++ aj00414 537 LHEFLVMRSphsdvgstdddrtVKSALEPPDFVHLVAQIAAGMEYLSSHH 586 fvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWm vH DLA+RN+LV ++l VKIsD GL R +y dyY + g++ lP++Wm aj00414 587 VVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYY-KLLGNSLLPIRWM 635 APEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyed APE+++ygkF++ SD+WS+GV+LWE+f++G qP Y g sn++v+e++ ++ aj00414 636 APEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQP-YCGYSNQDVVEMI-RN 683 GyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* ++ Lp+P++CP+ +Y lM +CW+e P++RP+F++++++L aj00414 684 RQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRL 722 PF00069.15.fs: domain 2 of 2, from 632 to 713: score 30.6, E = 1.4e-08 *->pwYmAPEvllggngygtkvDvWSlGvilyellt.GkpPFsgevqds. +++mAPE ++ + + + +D+WS+Gv+l+e+++ G P++g s+ aj00414 632 IRWMAPEAIM-YGKFSIDSDIWSYGVVLWEVFSyGLQPYCGY---Sn 674 ldqlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnk d ++ir++ p + d+p + L+ c+n aj00414 675 QDVVEMIRNRQVLPCPDDCP-----------------AWVYALMIECWNE 707 DPskRl<-* Ps+R+ aj00414 708 FPSRRP 713 //