hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-01095863/chunk_1/iprscan-20080807-01095863.nocrc
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Query sequence: aj00414
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 401.7   4.2e-116   1
SM00130                                                 171.4      9e-47   1
SM00220                                                  93.2    3.1e-23   1
SM00408                                                  69.1    5.4e-16   1
SM00409                                                  45.0      1e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/1      44   129 ..     1    58 []    45.0    1e-08
SM00408    1/1      50   118 ..     1    56 []    69.1  5.4e-16
SM00130    1/1     290   372 ..     1    90 []   171.4    9e-47
SM00219    1/1     449   722 ..     1   280 []   401.7 4.2e-116
SM00220    1/1     449   726 ..     1   231 []    93.2  3.1e-23

Alignments of top-scoring domains:
SM00409: domain 1 of 1, from 44 to 129: score 45.0, E = 1e-08
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                        ++t + G+++ L+C+++++++++++W++++ +  + +++   +++
     aj00414    44    VNnITIVQGQTAILHCkVAgnpppNVRWLkndapvvqeprriiirkt 90   

                   .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                     +++L+I+++   D+   G Y+C+at++ +++++  +  L V+   
     aj00414    91 eygsrLRIqDLDTTDT---GYYQCVATngMKTITA--TGVLFVR    129  

SM00408: domain 1 of 1, from 50 to 118: score 69.1, E = 5.4e-16
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL
                       +Gq+++L C+++g+p pn++Wlk++ p+ +++++   +++++gs+L
     aj00414    50    VQGQTAILHCKVAGNPPPNVRWLKnDAPVVqeprriiirkteYGSRL 96   

                   tiknvsleDsGlYtCvArNsvg<-*
                   +i++    D G+Y+CvA+N +    
     aj00414    97 RIQDLDTTDTGYYQCVATNGMK    118  

SM00130: domain 1 of 1, from 290 to 372: score 171.4, E = 9e-47
                   *->rdCyagddnGesYRGtvstTkSGkpCQrWdsqtphlhrftpesfpea
                      ++Cy+g  +G++YRGt+stTkSG++CQ+W+ q+ph h+ ++++fpe+
     aj00414   290    HQCYNG--SGMDYRGTASTTKSGHQCQPWALQHPHSHHLSSTDFPEL 334  

                   gqLGlleeNYCRNPDGdsegPWCYTtdpnvrdweyCdipqCes<-*
                   g    ++++YCRNP+G+ egPWC+T + nvr +e Cd+p+C+    
     aj00414   335 G----GGHAYCRNPGGQMEGPWCFTQNKNVR-MELCDVPSCSP    372  

SM00219: domain 1 of 1, from 449 to 722: score 401.7, E = 4.2e-116
                   *->ltlgkkLGeGaFGeVykGtlk........ieVAVKtLkeda....ke
                      +++ ++LGe  FG+VykG+l ++ ++++++ VA+KtLk+ a+++ +e
     aj00414   449    VRFMEELGEDRFGKVYKGHLFgpapgeqtQAVAIKTLKDKAegplRE 495  

                   eFlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGd
                   eF++Ea +  +l  +HpN+V+LlGv+t++       +Pl +++ y+++Gd
     aj00414   496 EFRHEAMLRARL--QHPNVVCLLGVVTKD-------QPLSMIFSYCSHGD 536  

                   LldyLrknrpk...............lslsdLlsfAlQIAkGMeYLeskn
                   L+++L  + p+++ ++++++++ ++ l ++d+++   QIA+GMeYL+s++
     aj00414   537 LHEFLVMRSPHsdvgstdddrtvksaLEPPDFVHLVAQIAAGMEYLSSHH 586  

                   fvHRDLAARNcLvgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkg
                   +vH DLA+RN+Lv +++ vKIsD GL R++y         dyY+      
     aj00414   587 VVHKDLATRNVLVYDKLNVKISDLGLFREVYAA-------DYYKL----L 625  

                   gktllPirWmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqq
                   g++llPirWmAPE++++gkF++ SD+WS+GV+LWE+f++G qPY g    
     aj00414   626 GNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCG---- 671  

                   fmsneevleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedR
                     sn++v+e ++++  lp+P++        CP+ +Y lM +CW+e P+ R
     aj00414   672 -YSNQDVVEMIRNRQVLPCPDD--------CPAWVYALMIECWNEFPSRR 712  

                   PtFselverl<-*
                   P+F+++++rl   
     aj00414   713 PRFKDIHSRL    722  

SM00220: domain 1 of 1, from 449 to 726: score 93.2, E = 3.1e-23
                   *->YellkklGkGaFGkVylardkk.....tgrlvAiKvik........e
                       +++++lG+  FGkVy+++  ++ +++  + vAiK +k++ +++ +e
     aj00414   449    VRFMEELGEDRFGKVYKGHLFGpapgeQTQAVAIKTLKdkaegplrE 495  

                   rilrEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkk
                    ++ E  +  + +HPN+V L++v   ++ l +++ yc++  GdL+++l+ 
     aj00414   496 EFRHEAMLRARlQHPNVVCLLGVVTKdQPLSMIFSYCSH--GDLHEFLVM 543  

                   rgrr..........glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLK
                   r ++++ +++++++  ++ l +++  ++++Qi+ ++eYL s++++H DL 
     aj00414   544 RSPHsdvgstdddrTVKSALEPpDFVHLVAQIAAGMEYLSSHHVVHKDLA 593  

                   PeNiLLds..hvKlaDFGlArql.........ttfvGTpeYmAPEvl...
                     N+L+ ++ +vK++D Gl r++   +  +          +mAPE +  +
     aj00414   594 TRNVLVYDklNVKISDLGLFREVyaadyykllGNSLLPIRWMAPEAImyg 643  

                   gYgkpavDiWSlGcilyEllt.GkpPFp.....qldlifkkig.......
                   +++   +DiWS G++l+E ++ G  P+++ +++++ +++++    + +++
     aj00414   644 KFSI-DSDIWSYGVVLWEVFSyGLQPYCgysnqDVVEMIRNRQvlpcpdd 692  

                   .SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                    +  +  L+  +++  P++R+  +++       ++  +    
     aj00414   693 cPAWVYALMIECWNEFPSRRPRFkDIHS-----RLRAWG    726  

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