hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-01152607/chunk_1/iprscan-20080807-01152607.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: aj00525
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 171.8    6.7e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00220    1/1     211   697 ..     1   231 []   171.8  6.7e-47

Alignments of top-scoring domains:
SM00220: domain 1 of 1, from 211 to 697: score 171.8, E = 6.7e-47
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik......erilrEik
                      Y++++klG G F++V+l++d+  +r vA+Kv+k+ ++ +e++  Eik
     aj00525   211    YHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKsaghytETAVDEIK 257  

                   iLkk.........dHPNIVkLydvfed.....dklylVmEyceGdlGdLf
                   +Lk  +++++++++ + IV+L+d f+ ++ ++ ++++V+E +++    L+
     aj00525   258 LLKCvrdsdpsdpKRETIVQLIDDFRIsgvngVHVCMVLEVLGH---QLL 304  

                   dllkkrgrrglrkvlsE.earfyfrQilsaLeYLHsq.gIiHRDLKPeNi
                   + + k +++g    l+ + +++++rQ+l +L+YLH + +IiH D+KPeNi
     aj00525   305 KWIIKSNYQG----LPVpCVKSIVRQVLHGLDYLHTKcKIIHTDIKPENI 350  

                   LLds.hvKlaDFGlArql................................
                   LL+ +   +      r+l  + ++ ++ + ++++++  ++ +++  ++++
     aj00525   351 LLCVgDAYI------RRLaaeatewqqagapppsrsivstapqevlqtgk 394  

                   ..................................................
                    +++++++ +++++++++  +++ ++ ++ +  +  ++ ++++ + ++++
     aj00525   395 lsknkrkkmrrkrkqqkrlleerlrdlqrleameaatqaedsglrldggs 444  

                   ..................................................
                   +++++++ ++++ + ++++ ++++ ++++++ + ++++++ +++  ++ +
     aj00525   445 gstsssgchpggaragpspassssapgggrslsagsqtsgfsgslfspas 494  

                   ..................................................
                    +  +++++++++++  +++++ + ++   ++ ++++ ++ + +  + ++
     aj00525   495 csilsgssnqretggllspstpfgasnllvnplepqnadkikikiadlgn 544  

                   ........ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyElltGkp
                       +++ t  + T+ Y+A Evl +  Yg+ ++DiWS  c+ +El+tG  
     aj00525   545 acwvhkhfTEDIQTRQYRAVEVLigaEYGP-PADIWSTACMAFELATGDY 593  

                   PFp.........qldlifkkig............................
                   +F+++++++ ++++d i +++   ++ ++    +++++++  +++++ ++
     aj00525   594 LFEphsgedysrDEDHIAHIVEllgdippafalsgrysreffnrrgelrh 643  

                   .......................SpeakdLikklLvkdPekRlta.eaLe
                    ++ ++++ ++   ++++++ +   ++  ++  ++++ PekR +a ++L+
     aj00525   644 ihnlkhwglyevlmekyewpleqATQFSAFLLPMMEYIPEKRASAaDCLQ 693  

                   deldikaHPff<-*
                          HP++   
     aj00525   694 -------HPWL    697  

//