hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-01210029/chunk_1/iprscan-20080807-01210029.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: aj00539 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07569.2.ls TUP1-like enhancer of split 331.1 1.8e-96 1 PF07569.2.fs TUP1-like enhancer of split 329.4 6e-96 1 PF00400.22.fs WD domain, G-beta repeat 152.6 9.7e-43 7 PF00400.22.ls WD domain, G-beta repeat 148.9 1.3e-41 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00400.22.fs 2/7 73 111 .. 1 38 [] 31.4 7.1e-08 PF00400.22.ls 1/5 73 111 .. 1 38 [] 33.4 7.5e-07 PF00400.22.ls 2/5 134 172 .. 1 38 [] 47.2 5.2e-11 PF00400.22.fs 3/7 134 172 .. 1 38 [] 45.2 9.1e-12 PF00400.22.ls 3/5 177 215 .. 1 38 [] 34.9 2.5e-07 PF00400.22.fs 4/7 177 215 .. 1 38 [] 33.0 2.6e-08 PF00400.22.ls 4/5 271 326 .. 1 38 [] 27.7 3.9e-05 PF00400.22.fs 6/7 271 326 .. 1 38 [] 25.7 2.9e-06 PF07569.2.fs 1/1 776 975 .. 1 279 [] 329.4 6e-96 PF07569.2.ls 1/1 776 975 .. 1 279 [] 331.1 1.8e-96 Alignments of top-scoring domains: PF00400.22.fs: domain 2 of 7, from 73 to 111: score 31.4, E = 7.1e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + + + H + V+cv++s + g +l sg++D+ i +W+ aj00539 73 PKMLcQMdNHLACVNCVRWSNS-GMYLPSGGDDKLIMVWK 111 PF00400.22.ls: domain 1 of 5, from 73 to 111: score 33.4, E = 7.5e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + + + H + V+cv++s + g +l sg++D+ i +W+ aj00539 73 PKMLcQMdNHLACVNCVRWSNS-GMYLPSGGDDKLIMVWK 111 PF00400.22.ls: domain 2 of 5, from 134 to 172: score 47.2, E = 5.2e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + c+++l+ H++ V++va+sp+ +las+S D+t+ iW+ aj00539 134 WRCVsILrNHSGDVMDVAWSPH-DAWLASCSVDNTVVIWN 172 PF00400.22.fs: domain 3 of 7, from 134 to 172: score 45.2, E = 9.1e-12 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + c+++l+ H++ V++va+sp+ +las+S D+t+ iW+ aj00539 134 WRCVsILrNHSGDVMDVAWSPH-DAWLASCSVDNTVVIWN 172 PF00400.22.ls: domain 3 of 5, from 177 to 215: score 34.9, E = 2.5e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* e + +l+gH++ V + ++p g+++as +D+++k+W aj00539 177 PEILaTLrGHSGLVKGLTWDPV-GKYIASQADDRSLKVWR 215 PF00400.22.fs: domain 4 of 7, from 177 to 215: score 33.0, E = 2.6e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* e + +l+gH++ V + ++p g+++as +D+++k+W aj00539 177 PEILaTLrGHSGLVKGLTWDPV-GKYIASQADDRSLKVWR 215 PF00400.22.ls: domain 4 of 5, from 271 to 326: score 27.7, E = 3.9e-05 *->geck.vl.gHtstVtcvafspd................sgpllasgS ++ + gH ++Vt v+f+p +++ +++++++++ ++++a gS aj00539 271 WKTNmDFvGHRKAVTVVKFNPKifkkkqkngssakpscPYCCCAVGS 317 rDgtikiWd<-* D+++ +W aj00539 318 KDRSLSVWL 326 PF00400.22.fs: domain 6 of 7, from 271 to 326: score 25.7, E = 2.9e-06 *->geck.vl.gHtstVtcvafspd................sgpllasgS ++ + gH ++Vt v+f+p +++ +++++++++ ++++a gS aj00539 271 WKTNmDFvGHRKAVTVVKFNPKifkkkqkngssakpscPYCCCAVGS 317 rDgtikiWd<-* D+++ +W aj00539 318 KDRSLSVWL 326 PF07569.2.fs: domain 1 of 1, from 776 to 975: score 329.4, E = 6e-96 *->cGrrllppIvLessasfLecngsykLlclTskGlLyvWNikkkkavl cGrrll+pI L s++s+L+c+gsy +++lT++++L+vW+++ +++v+ aj00539 776 CGRRLLSPILLPSPISTLHCTGSY-VMALTAAATLSVWDVHRQVVVV 821 sanslaPilsdvlLstvkvkRmknWYLLiFLvGDLvvELLWYeslsvcil ++ esl il aj00539 822 KE----------------------------------------ESLHS-IL 830 ltdaptviqasvTksGvPlvtLSnGdsflfstsLscWlrvsdkwWAlGsq ++++ tv+q+ +T++G+P+ LS+G++++f++sLs+W++vsdk+++l+++ aj00539 831 AGSDMTVSQILLTQHGIPVMNLSDGKAYCFNPSLSTWNLVSDKQDSLAQC 880 YWdssdssvlalskaavgpfqssttnesgiLsslkndnQiksPlnslegr ++f+ss+++++++L+s +Pl++++gr aj00539 881 -----------------ADFRSSLPSQDAMLCS--------GPLAIIQGR 905 tnnelsqagRlkllqrlvkaalaeegyenfeqlvtiahLENqlasAlaLe t+n+++qa+Rl+++++ v +q++t+a+LENq a+Al+L+ aj00539 906 TSNSGRQAARLFSVPHVV------------QQETTLAYLENQVAAALTLQ 943 speEyrhwLliYarrLaeeGsekkLrellkdL<-* s++EyrhwLl+Yar+L++eG+e++Lre++kdL aj00539 944 SSHEYRHWLLVYARYLVNEGFEYRLREICKDL 975 PF07569.2.ls: domain 1 of 1, from 776 to 975: score 331.1, E = 1.8e-96 *->cGrrllppIvLessasfLecngsykLlclTskGlLyvWNikkkkavl cGrrll+pI L s++s+L+c+gsy +++lT++++L+vW+++ +++v+ aj00539 776 CGRRLLSPILLPSPISTLHCTGSY-VMALTAAATLSVWDVHRQVVVV 821 sanslaPilsdvlLstvkvkRmknWYLLiFLvGDLvvELLWYeslsvcil ++ esl il aj00539 822 KE----------------------------------------ESLHS-IL 830 ltdaptviqasvTksGvPlvtLSnGdsflfstsLscWlrvsdkwWAlGsq ++++ tv+q+ +T++G+P+ LS+G++++f++sLs+W++vsdk+++l+++ aj00539 831 AGSDMTVSQILLTQHGIPVMNLSDGKAYCFNPSLSTWNLVSDKQDSLAQC 880 YWdssdssvlalskaavgpfqssttnesgiLsslkndnQiksPlnslegr ++f+ss+++++++L+s +Pl++++gr aj00539 881 -----------------ADFRSSLPSQDAMLCS--------GPLAIIQGR 905 tnnelsqagRlkllqrlvkaalaeegyenfeqlvtiahLENqlasAlaLe t+n+++qa+Rl+++++ v +q++t+a+LENq a+Al+L+ aj00539 906 TSNSGRQAARLFSVPHVV------------QQETTLAYLENQVAAALTLQ 943 speEyrhwLliYarrLaeeGsekkLrellkdL<-* s++EyrhwLl+Yar+L++eG+e++Lre++kdL aj00539 944 SSHEYRHWLLVYARYLVNEGFEYRLREICKDL 975 //