hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-01210029/chunk_1/iprscan-20080807-01210029.nocrc
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Query sequence: aj00539
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 159.1    4.4e-43   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/7      14    57 ..     1    46 []    20.3     0.27
SM00320    2/7      72   111 ..     1    46 []    25.6   0.0068
SM00320    3/7     133   172 ..     1    46 []    48.8    7e-10
SM00320    4/7     176   215 ..     1    46 []    34.7  1.3e-05
SM00320    5/7     225   267 ..     1    46 []     3.1  1.6e+02
SM00320    6/7     270   326 ..     1    46 []    14.1      2.9
SM00320    7/7     332   369 ..     1    46 []    12.6        5

Alignments of top-scoring domains:
SM00320: domain 1 of 7, from 14 to 57: score 20.3, E = 0.27
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.Dgt...i
                       + l  t+  H+g +p+ sv+++pdg      + +a+g++   ++++
     aj00539    14    MkLLKPTWVNHNG-KPIFSVDIHPDG------TKFATGGqGQDsgkV 53   

                   rlWd<-*
                    +W+   
     aj00539    54 VIWN    57   

SM00320: domain 2 of 7, from 72 to 111: score 25.6, E = 0.0068
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +k l+ ++ H +   V++v++s +g       +l sg++D+ i +W
     aj00539    72    IpKMLCQMDNHLA--CVNCVRWSNSG------MYLPSGGdDKLIMVW 110  

                   d<-*
                   +   
     aj00539   111 K    111  

SM00320: domain 3 of 7, from 133 to 172: score 48.8, E = 7e-10
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++++++l+ H+g  +V +va+sp++       +las+s D+t+ +W
     aj00539   133    QwRCVSILRNHSG--DVMDVAWSPHD------AWLASCSvDNTVVIW 171  

                   d<-*
                   +   
     aj00539   172 N    172  

SM00320: domain 4 of 7, from 176 to 215: score 34.7, E = 1.3e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++ l+tl+gH+g   V +++++p g      +++as  +D+++++W
     aj00539   176    FpEILATLRGHSG--LVKGLTWDPVG------KYIASQAdDRSLKVW 214  

                   d<-*
                       
     aj00539   215 R    215  

SM00320: domain 5 of 7, from 225 to 267: score 3.1, E = 1.6e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.Dgt....
                       +k+  ++ g t+   V+ +++spdg      ++l+s+   ++++++
     aj00539   225    ItKPFDECGGTTH---VLRLSWSPDG------HYLVSAHaMNNsgpt 262  

                   irlWd<-*
                     + +   
     aj00539   263 AQIIE    267  

SM00320: domain 6 of 7, from 270 to 326: score 14.1, E = 2.9
                   *->t.kllrtlkgHtgespVtsvafspdggss...........dspnlla
                       +k  + + gH++  +Vt v+f+p   + +++++++ +++ +  + a
     aj00539   270    GwKTNMDFVGHRK--AVTVVKFNPKIFKKkqkngssakpsCPYCCCA 314  

                   sgs.DgtirlWd<-*
                   +gs+D+++ +W    
     aj00539   315 VGSkDRSLSVWL    326  

SM00320: domain 7 of 7, from 332 to 369: score 12.6, E = 5
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  ++++l   ++  ++ ++++  +g        ++++s Dg++ + 
     aj00539   332    PlVVIHELF--DK--SIMDISWTLNG------LGILVCSmDGSVAFL 368  

                   d<-*
                   d   
     aj00539   369 D    369  

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