hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-01272266/chunk_1/iprscan-20080807-01272266.nocrc
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Query sequence: aj00560
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00230.10.fs Major intrinsic protein                        110.0      7e-35   1
PF00230.10.ls Major intrinsic protein                          3.7    4.2e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00230.10.fs   1/1      35   137 ..     1   116 [.   110.0    7e-35
PF00230.10.ls   1/1      35   196 ..     1   263 []     3.7  4.2e-10

Alignments of top-scoring domains:
PF00230.10.fs: domain 1 of 1, from 35 to 137: score 110.0, E = 7e-35
                   *->elrsvsftYlRaviAEFlaTllfVFaGvGvvsalgvkkaysslatlv
                         + +f  ++av AEFla l+fV  ++G  s +++++         
     aj00560    35    GVWTQAF--WKAVTAEFLAMLIFVLLSLG--STINWGGTEKP----- 72   

                   sscagvgllavAlAfGlalfvlVycvghAISGaHlNPAVTlAllvgrris
                       +v+ + ++l fGl++++ V+c+gh ISG+H+NPAVT+A   +r+is
     aj00560    73 ---LPVDMVLISLCFGLSIATMVQCFGH-ISGGHINPAVTVAMVCTRKIS 118  

                   llRAiyYiiAQllGAivaa<-*
                   + + ++Yi+AQ+lG i +a   
     aj00560   119 IAKSVFYIAAQCLGPIIGA    137  

PF00230.10.ls: domain 1 of 1, from 35 to 196: score 3.7, E = 4.2e-10
                   *->elrsvsftYlRaviAEFlaTllfVFaGvGvvsalgvkkaysslatlv
                         + +f  ++av AEFla l+fV  ++G  s +++++         
     aj00560    35    GVWTQAF--WKAVTAEFLAMLIFVLLSLG--STINWGGTEKP----- 72   

                   sscagvgllavAlAfGlalfvlVycvghAISGaHlNPAVTlAllvgrris
                       +v+ + ++l fGl++++ V+c+gh ISG+H+NPAVT+A   +r+is
     aj00560    73 ---LPVDMVLISLCFGLSIATMVQCFGH-ISGGHINPAVTVAMVCTRKIS 118  

                   llRAiyYiiAQllGAivaaalLkgvtngllfeaesdwwivylraggfans
                   + + ++Yi+AQ+lG i +a l  g++  +                 f+  
     aj00560   119 IAKSVFYIAAQCLGPIIGAVLAGGLYEYV-----------------FC-- 149  

                   lapGvnagqafvvEiilTfqLVytvfAttDdrrrgslGsiPilAPLaIGf
                     p v + ++f   +   +q   + +    d+r+    +           
     aj00560   150 --PDVEFKRRFKEAFSKAAQQTKGSYMEVEDNRSQVETD----------- 186  

                   ivalnhLaggpyTGasMNPARSFGPAvvtwkaGWGfvaktgvrdwddHWv
                                             +++                     
     aj00560   187 -------------------------DLILKP------------------- 192  

                   yWvGPlvGAalaaLvY<-*
                               + v+   
     aj00560   193 ------------GVVH    196  

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