# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oaj00591.fasta.nr -Q aj00591.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 aj00591, 292 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6823074 sequences Expectation_n fit: rho(ln(x))= 5.5134+/-0.000191; mu= 8.2249+/- 0.011 mean_var=80.6954+/-15.604, 0's: 34 Z-trim: 42 B-trim: 724 in 1/67 Lambda= 0.142774 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|73968986|ref|XP_849323.1| PREDICTED: similar to ( 285) 1806 381.1 1.1e-103 gi|55729583|emb|CAH91521.1| hypothetical protein [ ( 273) 1784 376.5 2.5e-102 gi|42768796|gb|AAS45600.1| thyrotroph embryonic fa ( 285) 1784 376.5 2.6e-102 gi|149743068|ref|XP_001502491.1| PREDICTED: simila ( 273) 1759 371.4 8.8e-101 gi|17389269|gb|AAH17689.1| Thyrotroph embryonic fa ( 273) 1742 367.9 9.9e-100 gi|74193247|dbj|BAE20622.1| unnamed protein produc ( 285) 1739 367.3 1.6e-99 gi|126343678|ref|XP_001363332.1| PREDICTED: simila ( 273) 1675 354.1 1.4e-95 gi|51338730|sp|Q10587|TEF_HUMAN Thyrotroph embryon ( 303) 1668 352.7 4.2e-95 gi|60834583|gb|AAX37101.1| thyrotrophic embryonic ( 304) 1668 352.7 4.2e-95 gi|114686689|ref|XP_525607.2| PREDICTED: similar t ( 503) 1668 352.8 6.2e-95 gi|83305807|sp|P41224|TEF_RAT Thyrotroph embryonic ( 301) 1655 350.0 2.7e-94 gi|51316561|sp|Q9JLC6|TEF_MOUSE Thyrotroph embryon ( 301) 1646 348.1 9.6e-94 gi|73968988|ref|XP_858494.1| PREDICTED: similar to ( 303) 1642 347.3 1.7e-93 gi|74190968|dbj|BAE28255.1| unnamed protein produc ( 301) 1640 346.9 2.3e-93 gi|606797|gb|AAA81373.1| thyrotroph embryonic fact ( 261) 1639 346.6 2.3e-93 gi|237085|gb|AAB20032.1| thyrotroph embryonic fact ( 261) 1631 345.0 7.3e-93 gi|74203123|dbj|BAE26249.1| unnamed protein produc ( 301) 1631 345.0 8.2e-93 gi|194226883|ref|XP_001502485.2| PREDICTED: simila ( 261) 1619 342.5 4.1e-92 gi|126343680|ref|XP_001363250.1| PREDICTED: simila ( 302) 1572 332.9 3.7e-89 gi|483938|gb|AAA82156.1| vitellogenin binding prot ( 293) 1529 324.0 1.7e-86 gi|149607537|ref|XP_001519820.1| PREDICTED: simila ( 263) 1516 321.3 9.9e-86 gi|57013027|sp|Q92172|TEF_CHICK Transcription fact ( 319) 1448 307.4 1.9e-81 gi|6686009|sp|P97516|TEF_PHOSU Thyrotroph embryoni ( 221) 1416 300.7 1.4e-79 gi|32766485|gb|AAH54981.1| Tef-prov protein [Xenop ( 278) 1203 256.8 2.7e-66 gi|89272740|emb|CAJ83354.1| thyrotrophic embryonic ( 296) 1166 249.2 5.5e-64 gi|168984114|emb|CAQ08873.1| thyrotrophic embryoni ( 183) 1098 235.1 6.2e-60 gi|73966504|ref|XP_866584.1| PREDICTED: similar to ( 289) 1083 232.1 7.6e-59 gi|73966502|ref|XP_866570.1| PREDICTED: similar to ( 290) 1080 231.5 1.2e-58 gi|52354752|gb|AAH82861.1| LOC494759 protein [Xeno ( 298) 1079 231.3 1.4e-58 gi|73966498|ref|XP_866540.1| PREDICTED: similar to ( 292) 1065 228.4 9.9e-58 gi|114669437|ref|XP_001171667.1| PREDICTED: hepati ( 286) 1057 226.8 3.1e-57 gi|118099706|ref|XP_415649.2| PREDICTED: similar t ( 292) 1011 217.3 2.2e-54 gi|6919907|sp|Q16534|HLF_HUMAN Hepatic leukemia fa ( 295) 1002 215.5 8.1e-54 gi|54696424|gb|AAV38584.1| hepatic leukemia factor ( 296) 1002 215.5 8.1e-54 gi|76642645|ref|XP_594205.2| PREDICTED: similar to ( 295) 1000 215.1 1.1e-53 gi|73966492|ref|XP_852892.1| PREDICTED: similar to ( 295) 997 214.4 1.7e-53 gi|51315795|sp|Q8BW74|HLF_MOUSE Hepatic leukemia f ( 295) 996 214.2 1.9e-53 gi|126307472|ref|XP_001363525.1| PREDICTED: simila ( 294) 991 213.2 3.9e-53 gi|149053852|gb|EDM05669.1| rCG33934 [Rattus norve ( 295) 982 211.3 1.4e-52 gi|6919906|sp|Q64709|HLF_RAT Hepatic leukemia fact ( 295) 982 211.3 1.4e-52 gi|194217146|ref|XP_001500261.2| PREDICTED: simila ( 337) 972 209.3 6.5e-52 gi|148683939|gb|EDL15886.1| hepatic leukemia facto ( 271) 970 208.8 7.3e-52 gi|73966496|ref|XP_866525.1| PREDICTED: similar to ( 305) 963 207.4 2.2e-51 gi|115528772|gb|AAI24625.1| Zgc:153035 [Danio reri ( 294) 951 205.0 1.2e-50 gi|148672610|gb|EDL04557.1| thyrotroph embryonic f ( 324) 950 204.8 1.5e-50 gi|31873832|emb|CAD97856.1| hypothetical protein [ ( 140) 927 199.8 2e-49 gi|149065828|gb|EDM15701.1| thyrotroph embryonic f ( 173) 874 188.9 4.6e-46 gi|55725408|emb|CAH89568.1| hypothetical protein [ ( 210) 815 176.8 2.4e-42 gi|56206225|emb|CAI24623.1| hepatic leukemia facto ( 210) 813 176.4 3.2e-42 gi|34785921|gb|AAH57693.1| Hlf protein [Mus muscul ( 211) 801 174.0 1.8e-41 >>gi|73968986|ref|XP_849323.1| PREDICTED: similar to thy (285 aa) initn: 1806 init1: 1806 opt: 1806 Z-score: 2016.6 bits: 381.1 E(): 1.1e-103 Smith-Waterman score: 1806; 97.527% identity (99.293% similar) in 283 aa overlap (10-292:3-285) 10 20 30 40 50 60 aj0059 SKHLLLGCVSCDWFSVAPAMDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEEDEAAAAST ::: ..::::::::::::::::::::::::::::::::::::::::::::: gi|739 MSSCDRIGVAPAMDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEEDEAAAAST 10 20 30 40 50 70 80 90 100 110 120 aj0059 MAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGK :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|739 MAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAQNLLLPVAELEGK 60 70 80 90 100 110 130 140 150 160 170 180 aj0059 ESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPADLV ::::::::::::::::.:: :::.:::::::::::::::::::::::::::::::::::: gi|739 ESASSSTASPPSSSTAVFQASETASSTESSLEKERETPSPIDPNCVEVDVNFNPDPADLV 120 130 140 150 160 170 190 200 210 220 230 240 aj0059 LSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR 180 190 200 210 220 230 250 260 270 280 290 aj0059 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL 240 250 260 270 280 >>gi|55729583|emb|CAH91521.1| hypothetical protein [Pong (273 aa) initn: 1784 init1: 1784 opt: 1784 Z-score: 1992.4 bits: 376.5 E(): 2.5e-102 Smith-Waterman score: 1784; 100.000% identity (100.000% similar) in 273 aa overlap (20-292:1-273) 10 20 30 40 50 60 aj0059 SKHLLLGCVSCDWFSVAPAMDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEEDEAAAAST ::::::::::::::::::::::::::::::::::::::::: gi|557 MDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEEDEAAAAST 10 20 30 40 70 80 90 100 110 120 aj0059 MAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 MAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGK 50 60 70 80 90 100 130 140 150 160 170 180 aj0059 ESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPADLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 ESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPADLV 110 120 130 140 150 160 190 200 210 220 230 240 aj0059 LSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR 170 180 190 200 210 220 250 260 270 280 290 aj0059 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL 230 240 250 260 270 >>gi|42768796|gb|AAS45600.1| thyrotroph embryonic factor (285 aa) initn: 1784 init1: 1784 opt: 1784 Z-score: 1992.1 bits: 376.5 E(): 2.6e-102 Smith-Waterman score: 1784; 96.113% identity (99.293% similar) in 283 aa overlap (10-292:3-285) 10 20 30 40 50 60 aj0059 SKHLLLGCVSCDWFSVAPAMDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEEDEAAAAST ::. ..::::::::::::::::::::: ::..:::::::::::::.::::: gi|427 MSSCSQIGVAPAMDMPEVLKSLLEHSLPWSEKKADKEKGKEKLEEDESAAAST 10 20 30 40 50 70 80 90 100 110 120 aj0059 MAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGK :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|427 MAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAQNLLLPVAELEGK 60 70 80 90 100 110 130 140 150 160 170 180 aj0059 ESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPADLV :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|427 ESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPSCVEVDVNFNPDPADLV 120 130 140 150 160 170 190 200 210 220 230 240 aj0059 LSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|427 LSSVPGGELFNPRKHRFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR 180 190 200 210 220 230 250 260 270 280 290 aj0059 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|427 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL 240 250 260 270 280 >>gi|149743068|ref|XP_001502491.1| PREDICTED: similar to (273 aa) initn: 1759 init1: 1759 opt: 1759 Z-score: 1964.5 bits: 371.4 E(): 8.8e-101 Smith-Waterman score: 1759; 98.168% identity (100.000% similar) in 273 aa overlap (20-292:1-273) 10 20 30 40 50 60 aj0059 SKHLLLGCVSCDWFSVAPAMDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEEDEAAAAST ::::::::::::::::::::::::::::::::::::::::: gi|149 MDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEEDEAAAAST 10 20 30 40 70 80 90 100 110 120 aj0059 MAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGK :::::::::::::::::::::::::::::::::::::::::.:::::.:::::::::::: gi|149 MAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPAGPTHLAQNLLLPVAELEGK 50 60 70 80 90 100 130 140 150 160 170 180 aj0059 ESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPADLV ::::::::::::::.:.::::::::::::::.:::::::::::::::::::::::::::: gi|149 ESASSSTASPPSSSAAVFQPSETVSSTESSLKKERETPSPIDPNCVEVDVNFNPDPADLV 110 120 130 140 150 160 190 200 210 220 230 240 aj0059 LSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR 170 180 190 200 210 220 250 260 270 280 290 aj0059 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL 230 240 250 260 270 >>gi|17389269|gb|AAH17689.1| Thyrotroph embryonic factor (273 aa) initn: 1742 init1: 1742 opt: 1742 Z-score: 1945.6 bits: 367.9 E(): 9.9e-100 Smith-Waterman score: 1742; 97.436% identity (99.634% similar) in 273 aa overlap (20-292:1-273) 10 20 30 40 50 60 aj0059 SKHLLLGCVSCDWFSVAPAMDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEEDEAAAAST ::::::::::::::::: ::..:::::::::::::.::::: gi|173 MDMPEVLKSLLEHSLPWSEKKADKEKGKEKLEEDESAAAST 10 20 30 40 70 80 90 100 110 120 aj0059 MAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGK :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|173 MAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAQNLLLPVAELEGK 50 60 70 80 90 100 130 140 150 160 170 180 aj0059 ESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPADLV :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|173 ESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPSCVEVDVNFNPDPADLV 110 120 130 140 150 160 190 200 210 220 230 240 aj0059 LSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|173 LSSVPGGELFNPRKHRFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR 170 180 190 200 210 220 250 260 270 280 290 aj0059 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL 230 240 250 260 270 >>gi|74193247|dbj|BAE20622.1| unnamed protein product [M (285 aa) initn: 1739 init1: 1739 opt: 1739 Z-score: 1942.0 bits: 367.3 E(): 1.6e-99 Smith-Waterman score: 1739; 93.640% identity (97.527% similar) in 283 aa overlap (10-292:3-285) 10 20 30 40 50 60 aj0059 SKHLLLGCVSCDWFSVAPAMDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEEDEAAAAST :: ..: :::::: :::.:::::: ....:::::::::::::.::::: gi|741 MSSCXQIGVXHXMDMPEVXKSLVEHSLPWSDNKADKEKGKEKLEEDESAAAST 10 20 30 40 50 70 80 90 100 110 120 aj0059 MAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGK :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|741 MAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAQNLLLPVAELEGK 60 70 80 90 100 110 130 140 150 160 170 180 aj0059 ESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPADLV :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|741 ESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPSCVEVDVNFNPDPADLV 120 130 140 150 160 170 190 200 210 220 230 240 aj0059 LSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|741 LSSVPGGELFNPRKHRFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR 180 190 200 210 220 230 250 260 270 280 290 aj0059 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL 240 250 260 270 280 >>gi|126343678|ref|XP_001363332.1| PREDICTED: similar to (273 aa) initn: 1675 init1: 1675 opt: 1675 Z-score: 1871.0 bits: 354.1 E(): 1.4e-95 Smith-Waterman score: 1675; 93.773% identity (97.070% similar) in 273 aa overlap (20-292:1-273) 10 20 30 40 50 60 aj0059 SKHLLLGCVSCDWFSVAPAMDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEEDEAAAAST ::::::::::::::::: :.:::::: :::::::::::::: gi|126 MDMPEVLKSLLEHSLPWAERRTDKEKEKEKLEEDEAAAAST 10 20 30 40 70 80 90 100 110 120 aj0059 MAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGK :::::::::::::::::::::::::::::::::::::::::::::: .: ::: ::::: gi|126 MAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLIQNALLPGIELEGK 50 60 70 80 90 100 130 140 150 160 170 180 aj0059 ESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPADLV ::.::::::: :::: .::::::.::::::.:.::::::::::.:::::::::::::::: gi|126 ESTSSSTASPSSSSTMVFQPSETASSTESSVENERETPSPIDPSCVEVDVNFNPDPADLV 110 120 130 140 150 160 190 200 210 220 230 240 aj0059 LSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 LSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSR 170 180 190 200 210 220 250 260 270 280 290 aj0059 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL :::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|126 DARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKSIVSKYETKYGPL 230 240 250 260 270 >>gi|51338730|sp|Q10587|TEF_HUMAN Thyrotroph embryonic f (303 aa) initn: 1641 init1: 1641 opt: 1668 Z-score: 1862.6 bits: 352.7 E(): 4.2e-95 Smith-Waterman score: 1668; 96.296% identity (97.407% similar) in 270 aa overlap (23-292:36-303) 10 20 30 40 50 aj0059 SKHLLLGCVSCDWFSVAPAMDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEE : :::.:.:. : : : ::::::::::: gi|513 GGKKPPVDPQAGPGPGPGRAAGERGLSGSFPLVLKKLMEN--PPREARLDKEKGKEKLEE 10 20 30 40 50 60 60 70 80 90 100 110 aj0059 DEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|513 DEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLL 70 80 90 100 110 120 120 130 140 150 160 170 aj0059 PVAELEGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|513 PVAELEGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNF 130 140 150 160 170 180 180 190 200 210 220 230 aj0059 NPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|513 NPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKN 190 200 210 220 230 240 240 250 260 270 280 290 aj0059 NVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|513 NVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL 250 260 270 280 290 300 >>gi|60834583|gb|AAX37101.1| thyrotrophic embryonic fact (304 aa) initn: 1641 init1: 1641 opt: 1668 Z-score: 1862.6 bits: 352.7 E(): 4.2e-95 Smith-Waterman score: 1668; 96.296% identity (97.407% similar) in 270 aa overlap (23-292:36-303) 10 20 30 40 50 aj0059 SKHLLLGCVSCDWFSVAPAMDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEE : :::.:.:. : : : ::::::::::: gi|608 GGKKPPVDPQAGPGPGPGRAAGERGLSGSFPLVLKKLMEN--PPREARLDKEKGKEKLEE 10 20 30 40 50 60 60 70 80 90 100 110 aj0059 DEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 DEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLL 70 80 90 100 110 120 120 130 140 150 160 170 aj0059 PVAELEGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 PVAELEGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNF 130 140 150 160 170 180 180 190 200 210 220 230 aj0059 NPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 NPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKN 190 200 210 220 230 240 240 250 260 270 280 290 aj0059 NVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 NVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL 250 260 270 280 290 300 gi|608 D >>gi|114686689|ref|XP_525607.2| PREDICTED: similar to th (503 aa) initn: 1641 init1: 1641 opt: 1668 Z-score: 1859.5 bits: 352.8 E(): 6.2e-95 Smith-Waterman score: 1668; 96.296% identity (97.407% similar) in 270 aa overlap (23-292:236-503) 10 20 30 40 50 aj0059 SKHLLLGCVSCDWFSVAPAMDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEE : :::.:.:. : : : ::::::::::: gi|114 GGNFFPVDPQAGPGPGPGRAAGERGLSGSFPLVLKKLMEN--PPREARLDKEKGKEKLEE 210 220 230 240 250 260 60 70 80 90 100 110 aj0059 DEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLL 270 280 290 300 310 320 120 130 140 150 160 170 aj0059 PVAELEGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PVAELEGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNF 330 340 350 360 370 380 180 190 200 210 220 230 aj0059 NPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKN 390 400 410 420 430 440 240 250 260 270 280 290 aj0059 NVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL 450 460 470 480 490 500 292 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 01:30:41 2008 done: Thu Aug 7 01:33:18 2008 Total Scan time: 742.330 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]