hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-01331943/chunk_1/iprscan-20080807-01331943.nocrc
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Query sequence: aj00591
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07716.5.ls Basic region leucine zipper                     76.3    8.8e-20   1
PF07716.5.fs Basic region leucine zipper                     74.4    2.9e-19   1
PF00170.11.fs bZIP transcription factor                       26.5    7.5e-07   1
PF00170.11.ls bZIP transcription factor                       28.5    2.3e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00170.11.fs   1/1     220   284 ..     1    65 []    26.5  7.5e-07
PF00170.11.ls   1/1     220   284 ..     1    65 []    28.5  2.3e-05
PF07716.5.fs   1/1     221   274 ..     1    57 []    74.4  2.9e-19
PF07716.5.ls   1/1     221   274 ..     1    57 []    76.3  8.8e-20

Alignments of top-scoring domains:
PF00170.11.fs: domain 1 of 1, from 220 to 284: score 26.5, E = 7.5e-07
                   *->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrk
                      +k+ K   R+ kN +AA+rsR  ++ +  + + +++ Le+eN+aLr 
     aj00591   220    QKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRT 266  

                   elerLkkevakLksenee<-*
                   e+ +L+kev k k  +++   
     aj00591   267 EVAELRKEVGKCKTIVSK    284  

PF00170.11.ls: domain 1 of 1, from 220 to 284: score 28.5, E = 2.3e-05
                   *->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrk
                      +k+ K   R+ kN +AA+rsR  ++ +  + + +++ Le+eN+aLr 
     aj00591   220    QKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRT 266  

                   elerLkkevakLksenee<-*
                   e+ +L+kev k k  +++   
     aj00591   267 EVAELRKEVGKCKTIVSK    284  

PF07716.5.fs: domain 1 of 1, from 221 to 274: score 74.4, E = 2.9e-19
                   *->kddeyrdrRrlrNneAAkrsReKkKqreeeleervkeLeeeNaqLLk
                      kd++y+ rR+ +Nn+AAkrsR++++++e+++ +r+ +Le+eN +L  
     aj00591   221    KDEKYWTRRK-KNNVAAKRSRDARRLKENQITIRAAFLEKENTAL-- 264  

                   rqkveqLekE<-*
                   r +v+ L+kE   
     aj00591   265 RTEVAELRKE    274  

PF07716.5.ls: domain 1 of 1, from 221 to 274: score 76.3, E = 8.8e-20
                   *->kddeyrdrRrlrNneAAkrsReKkKqreeeleervkeLeeeNaqLLk
                      kd++y+ rR+ +Nn+AAkrsR++++++e+++ +r+ +Le+eN +L  
     aj00591   221    KDEKYWTRRK-KNNVAAKRSRDARRLKENQITIRAAFLEKENTAL-- 264  

                   rqkveqLekE<-*
                   r +v+ L+kE   
     aj00591   265 RTEVAELRKE    274  

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