hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-01383464/chunk_1/iprscan-20080807-01383464.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: aj00633 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01421.9.ls Reprolysin (M12B) family zinc metallo 261.5 1.6e-75 1 PF01421.9.fs Reprolysin (M12B) family zinc metallo 259.8 5.1e-75 1 PF01562.9.ls Reprolysin family propeptide 164.8 2e-46 1 PF01562.9.fs Reprolysin family propeptide 162.9 7.8e-46 1 PF00200.13.fs Disintegrin 123.9 4.8e-38 1 PF00200.13.ls Disintegrin 125.9 1e-34 1 PF08516.2.ls ADAM cysteine-rich 125.8 1.1e-34 1 PF08516.2.fs ADAM cysteine-rich 123.8 3.5e-34 1 PF07974.3.ls EGF-like domain 26.9 6.5e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01562.9.fs 1/1 5 164 .. 1 165 [] 162.9 7.8e-46 PF01562.9.ls 1/1 5 164 .. 1 165 [] 164.8 2e-46 PF01421.9.ls 1/1 210 411 .. 1 203 [] 261.5 1.6e-75 PF01421.9.fs 1/1 210 408 .. 1 200 [. 259.8 5.1e-75 PF00200.13.fs 1/1 427 503 .. 1 80 [] 123.9 4.8e-38 PF00200.13.ls 1/1 427 503 .. 1 80 [] 125.9 1e-34 PF08516.2.fs 1/1 505 626 .. 1 118 [] 123.8 3.5e-34 PF08516.2.ls 1/1 505 626 .. 1 118 [] 125.8 1.1e-34 PF07974.3.ls 1/1 654 681 .. 1 37 [] 26.9 6.5e-05 Alignments of top-scoring domains: PF01562.9.fs: domain 1 of 1, from 5 to 164: score 162.9, E = 7.8e-46 *->lLlllllpglaglgaalgtpweyssyEvviPekltsegkrr.v.kqd ++ll +p +++ ++lg +++ +++ ++ek ++e+ + +v ++d aj00633 5 PPALLSIPSVLSW-GVLGPA-GGTEEQQAESEKAPREPLEPqVlQDD 49 ldirlkslkeekyeeelsYvlrieGkpyiLhLeknrgllapdftvttYde l+i+lk+++++ +e l+++l ++G +iL L +nr+l++ t+ +Y++ aj00633 50 LPISLKKVLQTSLPEPLRIKLELDGDSHILELLQNRELVPGRPTLVWYQP 99 dGtlvteepliqdhCyYqGyVeGypnSaVslSTCsGGLRGllql.envsY dGt+v++e + +++C+YqG+V+Gy++S+Vs++TCs GLRGl +l+ + sY aj00633 100 DGTRVVSEGHTLENCCYQGRVRGYAGSWVSICTCS-GLRGLVVLtPERSY 148 gIEPlesssgfeAQrlPHiiY<-* +E +++ ++ ii+ aj00633 149 TLEQGPGDLQGP-----PIIS 164 PF01562.9.ls: domain 1 of 1, from 5 to 164: score 164.8, E = 2e-46 *->lLlllllpglaglgaalgtpweyssyEvviPekltsegkrr.v.kqd ++ll +p +++ ++lg +++ +++ ++ek ++e+ + +v ++d aj00633 5 PPALLSIPSVLSW-GVLGPA-GGTEEQQAESEKAPREPLEPqVlQDD 49 ldirlkslkeekyeeelsYvlrieGkpyiLhLeknrgllapdftvttYde l+i+lk+++++ +e l+++l ++G +iL L +nr+l++ t+ +Y++ aj00633 50 LPISLKKVLQTSLPEPLRIKLELDGDSHILELLQNRELVPGRPTLVWYQP 99 dGtlvteepliqdhCyYqGyVeGypnSaVslSTCsGGLRGllql.envsY dGt+v++e + +++C+YqG+V+Gy++S+Vs++TCs GLRGl +l+ + sY aj00633 100 DGTRVVSEGHTLENCCYQGRVRGYAGSWVSICTCS-GLRGLVVLtPERSY 148 gIEPlesssgfeAQrlPHiiY<-* +E +++ ++ ii+ aj00633 149 TLEQGPGDLQGP-----PIIS 164 PF01421.9.ls: domain 1 of 1, from 210 to 411: score 261.5, E = 1.6e-75 *->rYiELvIVvDhgmytkygsdlnkirqrVhqivNlvNeiYrpqLNIrV + +ELvIV+Dh + +ky+ d + +r ++++ l+++++rp LN+rV aj00633 210 KTVELVIVADHSEAQKYR-DFQHLLNRTLEVALLLDTFFRP-LNVRV 254 vLvgLEIWsdgDkInvqsdandTLhsFgeWRetdLlkrksHDnAqLLtgi +LvgLE W+ +D+ ++++++ +TL++F+ WR+ +Ll r +HD AqL+tg+ aj00633 255 ALVGLEAWTQRDLVEISPNPAVTLENFLHWRRAHLLPRLPHDSAQLVTGT 304 dfdgntiGaAyvggmCspkrSvGVvqdhspivllvAvtMAHELGHNLGmt +f g+t+G+A ++++Csp++S+GV++dhs + l+vA +AHELGH+LG++ aj00633 305 SFSGPTVGMAIQNSICSPDFSGGVNMDHSTSILGVASSIAHELGHSLGLD 354 HDdkntdgCtCe...gggsCIMnpvassspskKkFSnCSkddyqkFltkq HD + +C C+++ ++++CIM++++ p+ FSnCS+ ++k l+++ aj00633 355 HDLPGN-SCPCPgpaPAKTCIMEASTDFLPGL-NFSNCSRRALEKALLDG 402 kpqCLlNkP<-* ++ CL+ + aj00633 403 MGSCLFERL 411 PF01421.9.fs: domain 1 of 1, from 210 to 408: score 259.8, E = 5.1e-75 *->rYiELvIVvDhgmytkygsdlnkirqrVhqivNlvNeiYrpqLNIrV + +ELvIV+Dh + +ky+ d + +r ++++ l+++++rp LN+rV aj00633 210 KTVELVIVADHSEAQKYR-DFQHLLNRTLEVALLLDTFFRP-LNVRV 254 vLvgLEIWsdgDkInvqsdandTLhsFgeWRetdLlkrksHDnAqLLtgi +LvgLE W+ +D+ ++++++ +TL++F+ WR+ +Ll r +HD AqL+tg+ aj00633 255 ALVGLEAWTQRDLVEISPNPAVTLENFLHWRRAHLLPRLPHDSAQLVTGT 304 dfdgntiGaAyvggmCspkrSvGVvqdhspivllvAvtMAHELGHNLGmt +f g+t+G+A ++++Csp++S+GV++dhs + l+vA +AHELGH+LG++ aj00633 305 SFSGPTVGMAIQNSICSPDFSGGVNMDHSTSILGVASSIAHELGHSLGLD 354 HDdkntdgCtCe...gggsCIMnpvassspskKkFSnCSkddyqkFltkq HD + +C C+++ ++++CIM++++ p+ FSnCS+ ++k l+++ aj00633 355 HDLPGN-SCPCPgpaPAKTCIMEASTDFLPGL-NFSNCSRRALEKALLDG 402 kpqCLl<-* ++ CL+ aj00633 403 MGSCLF 408 PF00200.13.fs: domain 1 of 1, from 427 to 503: score 123.9, E = 4.8e-38 *->EggEeCDCGspedCqnkdpCCdaktCkLkpGAqCsPsnGpCCknCqf E+gE+CDCG++ dC dpCCd tC+L+pGAqC+ s GpCC+nCq+ aj00633 427 EPGEQCDCGFLDDC--VDPCCDSLTCQLRPGAQCA-SDGPCCQNCQL 470 kpkgtvCRpatgeCDlpeyCnGtSaeCPpdpyv<-* p+g CRp +g+CDlpe+C G S++CPpd+ aj00633 471 RPSGWQCRPTRGDCDLPEFCPGDSSQCPPDVSL 503 PF00200.13.ls: domain 1 of 1, from 427 to 503: score 125.9, E = 1e-34 *->EggEeCDCGspedCqnkdpCCdaktCkLkpGAqCsPsnGpCCknCqf E+gE+CDCG++ dC dpCCd tC+L+pGAqC+ s GpCC+nCq+ aj00633 427 EPGEQCDCGFLDDC--VDPCCDSLTCQLRPGAQCA-SDGPCCQNCQL 470 kpkgtvCRpatgeCDlpeyCnGtSaeCPpdpyv<-* p+g CRp +g+CDlpe+C G S++CPpd+ aj00633 471 RPSGWQCRPTRGDCDLPEFCPGDSSQCPPDVSL 503 PF08516.2.fs: domain 1 of 1, from 505 to 626: score 123.8, E = 3.5e-34 *->DGtPCqnnqgYCYnGnCptrdqQCqelFGpgAkvApdsCYeelNskG DG PC+++q++C +G+C ++ qQCq+l+GpgA +A + C + N++G aj00633 505 DGEPCAGGQAVCMHGRCASYAQQCQSLWGPGAQPAAPLCLQTANTRG 551 drfGNCGkesrng.tyipCepqDvkCGkLqCtnvs.lpllgehatviytn + fG CG++ ++++y+ C p+D++CG LqC+ + + pllg + aj00633 552 NAFGSCGRN--PSgSYVSCTPRDAICGQLQCQTGRtQPLLGSIRDLLWET 599 i....ngvtCwgtdyhlgmddpDiGlV<-* i+ ++ + C ++ +lg+d+ + l aj00633 600 IdvngTELNCSWVHLDLGSDVAQPLLT 626 PF08516.2.ls: domain 1 of 1, from 505 to 626: score 125.8, E = 1.1e-34 *->DGtPCqnnqgYCYnGnCptrdqQCqelFGpgAkvApdsCYeelNskG DG PC+++q++C +G+C ++ qQCq+l+GpgA +A + C + N++G aj00633 505 DGEPCAGGQAVCMHGRCASYAQQCQSLWGPGAQPAAPLCLQTANTRG 551 drfGNCGkesrng.tyipCepqDvkCGkLqCtnvs.lpllgehatviytn + fG CG++ ++++y+ C p+D++CG LqC+ + + pllg + aj00633 552 NAFGSCGRN--PSgSYVSCTPRDAICGQLQCQTGRtQPLLGSIRDLLWET 599 i....ngvtCwgtdyhlgmddpDiGlV<-* i+ ++ + C ++ +lg+d+ + l aj00633 600 IdvngTELNCSWVHLDLGSDVAQPLLT 626 PF07974.3.ls: domain 1 of 1, from 654 to 681: score 26.9, E = 6.5e-05 *->C...CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+++C+g hG+C+s+ +C+C+ g + +dC aj00633 654 CrskCHG-HGVCDSN-------RHCYCEEG----WAPPDC 681 //