hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-01383464/chunk_1/iprscan-20080807-01383464.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: aj00633
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00608                                                 206.2      3e-57   1
SM00050                                                 152.6    4.1e-41   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00050    1/1     427   503 ..     1    81 []   152.6  4.1e-41
SM00608    1/1     504   646 ..     1   152 []   206.2    3e-57

Alignments of top-scoring domains:
SM00050: domain 1 of 1, from 427 to 503: score 152.6, E = 4.1e-41
                   *->EeGEECDCGspkeeCrttdpCCdpaTCkLkpgaqCadsGpCCekdCk
                      E+GE+CDCG++ ++C   dpCCd+ TC+L+pgaqCa++GpCC+ +C+
     aj00633   427    EPGEQCDCGFL-DDC--VDPCCDSLTCQLRPGAQCASDGPCCQ-NCQ 469  

                   fkpaGtlCRpsvdeCDlpEYCnGtSaeCPpDvyv<-*
                   ++p+G++CRp++++CDlpE+C G+S++CPpDv +   
     aj00633   470 LRPSGWQCRPTRGDCDLPEFCPGDSSQCPPDVSL    503  

SM00608: domain 1 of 1, from 504 to 646: score 206.2, E = 3e-57
                   *->qDGtPCdngqgYCynGrCptrdqQCqalFGpgAkvApdsCYeevNsk
                       DG+PC++gq++C++GrC ++ qQCq+l+GpgA++A + C ++ N++
     aj00633   504    GDGEPCAGGQAVCMHGRCASYAQQCQSLWGPGAQPAAPLCLQTANTR 550  

                   GdrfGNCGrensangtyipCapeDvkCGkLqCtnvtelPllgehatviqs
                   G+ fG CGr++s  g+y+ C p+D+ CG LqC++++ +Pllg+  ++ + 
     aj00633   551 GNAFGSCGRNPS--GSYVSCTPRDAICGQLQCQTGRTQPLLGSIRDLLWE 598  

                   niggyiq...kgitCwgtdyhlgtdPvdltidpDpGlVkdGTkCGpgKVC
                   +i      ++++++C ++++ lg+d     +  +p l+ +GT CGpg VC
     aj00633   599 TI----DvngTELNCSWVHLDLGSD-----V-AQPLLTLPGTACGPGLVC 638  

                   ingrCvdv<-*
                   i++rC+ v   
     aj00633   639 IDHRCQRV    646  

//