hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-01443582/chunk_1/iprscan-20080807-01443582.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: aj00696 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07647.7.fs SAM domain (Sterile alpha motif) 84.4 4.2e-24 2 PF07647.7.ls SAM domain (Sterile alpha motif) 88.3 2.1e-23 2 PF00536.20.fs SAM domain (Sterile alpha motif) 54.2 2.5e-15 2 PF00536.20.ls SAM domain (Sterile alpha motif) 58.1 2.7e-14 2 PF07653.7.fs Variant SH3 domain 28.0 2e-07 1 PF07653.7.ls Variant SH3 domain 29.8 8.8e-06 1 PF00018.18.ls SH3 domain -2.3 0.033 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00018.18.ls 1/1 663 719 .. 1 59 [] -2.3 0.033 PF07653.7.fs 1/1 664 719 .. 1 69 [] 28.0 2e-07 PF07653.7.ls 1/1 664 719 .. 1 69 [] 29.8 8.8e-06 PF07647.7.ls 1/2 736 803 .. 1 72 [] 41.1 3.6e-09 PF00536.20.fs 1/2 737 801 .. 1 65 [] 32.9 4.5e-09 PF00536.20.ls 1/2 737 801 .. 1 65 [] 34.9 2.5e-07 PF07647.7.fs 1/2 741 803 .. 6 72 .] 39.1 8e-11 PF07647.7.fs 2/2 1280 1347 .. 1 72 [] 45.3 1.3e-12 PF07647.7.ls 2/2 1280 1347 .. 1 72 [] 47.2 5e-11 PF00536.20.ls 2/2 1281 1345 .. 1 65 [] 23.2 0.00088 PF00536.20.fs 2/2 1286 1345 .. 6 65 .] 21.3 1.3e-05 Alignments of top-scoring domains: PF00018.18.ls: domain 1 of 1, from 663 to 719: score -2.3, E = 0.033 *->kkvvALYDYeare..sdELsFkkGDvitvleksddpgWWkgrlkgtg ++++ D++++ + d L +kkGD+i +++k + g W g l+ aj00696 663 GRARVHTDFTPSPydTDSLKLKKGDIIDIISKPPM-GTWMGLLN--- 705 GkeGliPsNYVepv<-* +k+G + YV+ aj00696 706 NKVGTFKFIYVDVL 719 PF07653.7.fs: domain 1 of 1, from 664 to 719: score 28.0, E = 2e-07 *->ygraiedyva.AtdknenleeeeLslkkGdvvkVidvggskdddgw. ++r++ d++++++d++ L lkkGd++ +i +++ ++ aj00696 664 RARVHTDFTPsPYDTDS------LKLKKGDIIDII-----SKPPMGt 699 wegeslggGrrrRGlvPssaveel<-* w g + ++++ G +++ +v +l aj00696 700 WMGLL--NNKV--GTFKFIYVDVL 719 PF07653.7.ls: domain 1 of 1, from 664 to 719: score 29.8, E = 8.8e-06 *->ygraiedyva.AtdknenleeeeLslkkGdvvkVidvggskdddgw. ++r++ d++++++d++ L lkkGd++ +i +++ ++ aj00696 664 RARVHTDFTPsPYDTDS------LKLKKGDIIDII-----SKPPMGt 699 wegeslggGrrrRGlvPssaveel<-* w g + ++++ G +++ +v +l aj00696 700 WMGLL--NNKV--GTFKFIYVDVL 719 PF07647.7.ls: domain 1 of 2, from 736 to 803: score 41.1, E = 3.6e-09 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa + ++sv + L++i+l +++ + F+ +g++ l+ + l+eedL aj00696 736 GRPPQPKSVEDLLDRINL-KEHMPTFLFNGYEDLDTF-KLLEEEDL- 779 klalGitsvghRkkilkkiqelkqq<-* +l+i ++ hR +l++++ l++ aj00696 780 D-ELKIRDPEHRAVLLTAVELLQEY 803 PF00536.20.fs: domain 1 of 2, from 737 to 801: score 32.9, E = 4.5e-09 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG + + sV + L+ i l++++ +Fl +gy d+dt+ +l eeDL +l+ aj00696 737 RPPQPKSVEDLLDRINLKEHMPTFLFNGYEDLDTFKLLEEEDLDELK 783 vtllGHrkKIlssIqgLk<-* ++ + Hr +l +++ L aj00696 784 IRDPEHRAVLLTAVELLQ 801 PF00536.20.ls: domain 1 of 2, from 737 to 801: score 34.9, E = 2.5e-07 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG + + sV + L+ i l++++ +Fl +gy d+dt+ +l eeDL +l+ aj00696 737 RPPQPKSVEDLLDRINLKEHMPTFLFNGYEDLDTFKLLEEEDLDELK 783 vtllGHrkKIlssIqgLk<-* ++ + Hr +l +++ L aj00696 784 IRDPEHRAVLLTAVELLQ 801 PF07647.7.fs: domain 1 of 2, from 741 to 803: score 39.1, E = 8e-11 *->lesvaeWLesiglegqYkdnFsdqgitglellllrlteedLaklalG ++sv + L++i+l +++ + F+ +g++ l+ + l+eedL +l+ aj00696 741 PKSVEDLLDRINL-KEHMPTFLFNGYEDLDTF-KLLEEEDL-D-ELK 783 itsvghRkkilkkiqelkqq<-* i ++ hR +l++++ l++ aj00696 784 IRDPEHRAVLLTAVELLQEY 803 PF07647.7.fs: domain 2 of 2, from 1280 to 1347: score 45.3, E = 1.3e-12 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa v+ + +sv++WL sigl + Y+ +s +g+++l+++ + l++ L aj00696 1280 VSPGCISSVSDWLISIGL-PMYAGTLSTAGFSTLSQV-PSLSHTCL- 1323 klalGitsvghRkkilkkiqelkqq<-* + + Git h +k+l+++ +k + aj00696 1324 Q-EAGITEERHIRKLLSAARLFKLP 1347 PF07647.7.ls: domain 2 of 2, from 1280 to 1347: score 47.2, E = 5e-11 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa v+ + +sv++WL sigl + Y+ +s +g+++l+++ + l++ L aj00696 1280 VSPGCISSVSDWLISIGL-PMYAGTLSTAGFSTLSQV-PSLSHTCL- 1323 klalGitsvghRkkilkkiqelkqq<-* + + Git h +k+l+++ +k + aj00696 1324 Q-EAGITEERHIRKLLSAARLFKLP 1347 PF00536.20.ls: domain 2 of 2, from 1281 to 1345: score 23.2, E = 0.00088 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG + +sV++WL sigl+ Y+ + ag++++++++ l+ L++ G aj00696 1281 SPGCISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAG 1327 vtllGHrkKIlssIqgLk<-* +t H K+ls+ + +k aj00696 1328 ITEERHIRKLLSAARLFK 1345 PF00536.20.fs: domain 2 of 2, from 1286 to 1345: score 21.3, E = 1.3e-05 *->esVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlGvtllG +sV++WL sigl+ Y+ + ag++++++++ l+ L++ G+t aj00696 1286 SSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEER 1332 HrkKIlssIqgLk<-* H K+ls+ + +k aj00696 1333 HIRKLLSAARLFK 1345 //