hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-01443582/chunk_1/iprscan-20080807-01443582.nocrc
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Query sequence: aj00696
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00454                                                 111.0    1.4e-28   2
SM00326                                                  26.6     0.0034   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00326    1/1     663   720 ..     1    58 []    26.6   0.0034
SM00454    1/2     736   803 ..     1    67 []    55.8  5.6e-12
SM00454    2/2    1280  1347 ..     1    67 []    55.2  8.6e-12

Alignments of top-scoring domains:
SM00326: domain 1 of 1, from 663 to 720: score 26.6, E = 0.0034
                   *->eyvvAlYDyea..qnedELsFkkGDiitvleksddgWweGelnrtGk
                      +++++  D+++++ + d L +kkGDii +++k   g w G ln  +k
     aj00696   663    GRARVHTDFTPspYDTDSLKLKKGDIIDIISKPPMGTWMGLLN--NK 707  

                   eGlfPsnYVeeie<-*
                   +G f   YV ++    
     aj00696   708 VGTFKFIYVDVLS    720  

SM00454: domain 1 of 2, from 736 to 803: score 55.8, E = 5.6e-12
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                        ++ p+sV + L+ i+l +++++F+ ng+   +  +l++eedL el
     aj00696   736    GRpPQPKSVEDLLDRINLKEHMPTFLFNGYEDLDTFKLLEEEDLDEL 782  

                   GitllGhRkkIlsaiqklkeq<-*
                   +i ++ hR  +l a++ l+e    
     aj00696   783 KIRDPEHRAVLLTAVELLQEY    803  

SM00454: domain 2 of 2, from 1280 to 1347: score 55.2, E = 8.6e-12
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      vs+ + +sV++WL sigl++Ya +++++g+++  ++  +s+  L+e 
     aj00696  1280    VSpGCISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEA 1326 

                   GitllGhRkkIlsaiqklkeq<-*
                   Git   h +k+lsa + +k +   
     aj00696  1327 GITEERHIRKLLSAARLFKLP    1347 

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