hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090617/iprscan-20090617-19371893/chunk_1/iprscan-20090617-19371893.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: aj00720 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00955.11.ls HCO3- transporter family 1265.0 0 1 PF00955.11.fs HCO3- transporter family 1263.3 0 1 PF07565.4.ls Band 3 cytoplasmic domain 617.8 8.7e-183 1 PF07565.4.fs Band 3 cytoplasmic domain 616.0 3.1e-182 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07565.4.fs 1/1 355 623 .. 1 286 [] 616.0 3.1e-182 PF07565.4.ls 1/1 355 623 .. 1 286 [] 617.8 8.7e-183 PF00955.11.fs 1/1 677 1172 .. 1 519 [] 1263.3 0 PF00955.11.ls 1/1 677 1172 .. 1 519 [] 1265.0 0 Alignments of top-scoring domains: PF07565.4.fs: domain 1 of 1, from 355 to 623: score 616.0, E = 3.1e-182 *->dveeggerWGKPHVAtLSfhSLlELRrciakGavLLDLqatSLpgva dvee++erWGKPHVA+LSf+SLlELRr++a+GavLLDL++++Lpgva aj00720 355 DVEEETERWGKPHVASLSFRSLLELRRTLAHGAVLLDLDQQTLPGVA 401 hlVvdqlilsgqlraedReeVLRALLlKHsHqsekkdlnGaGGekGGflp h+Vv+q+++s+q++aedR++VLRALLlKHsH+s++kd++ +p aj00720 402 HQVVEQMVISDQIKAEDRANVLRALLLKHSHPSDEKDFS---------FP 442 rarsqasiGkklshhhaqsaskdeevpegpvtsgtpllpqeserdlemqt r++s++s+G++l+hhh+q+a++d++v+e p+++g+p+++ e+er++e+++ aj00720 443 RNISAGSLGSLLGHHHGQGAESDPHVTE-PLMGGVPETRLEVERERELPP 491 lhevgqsGvnCdissrdksKlelkllkKiPedaEAsnVLVGevDFLErPi ++++++ ++r+ksK+elkll+KiPe+aEA++VLVG+v+FL+rP+ aj00720 492 PAPPAG-------ITRSKSKHELKLLEKIPENAEATVVLVGCVEFLSRPT 534 vAFVRLqeAveLegvlEVPVPvRFLFvLLGPsgkgqdYHEiGRaiATLMs +AFVRL+eAveL++vlEVPVPvRFLF+LLGPs++++dYHEiGR+i+TLMs aj00720 535 MAFVRLREAVELDAVLEVPVPVRFLFLLLGPSSANMDYHEIGRSISTLMS 584 DevFhddAYlAkeReDLLagIdeFLDcsiVLPPgEvdpe<-* D++Fh++AYlA+eReDLL++I++FLDcs+VLPP+Ev++e aj00720 585 DKQFHEAAYLADEREDLLTAINAFLDCSVVLPPSEVQGE 623 PF07565.4.ls: domain 1 of 1, from 355 to 623: score 617.8, E = 8.7e-183 *->dveeggerWGKPHVAtLSfhSLlELRrciakGavLLDLqatSLpgva dvee++erWGKPHVA+LSf+SLlELRr++a+GavLLDL++++Lpgva aj00720 355 DVEEETERWGKPHVASLSFRSLLELRRTLAHGAVLLDLDQQTLPGVA 401 hlVvdqlilsgqlraedReeVLRALLlKHsHqsekkdlnGaGGekGGflp h+Vv+q+++s+q++aedR++VLRALLlKHsH+s++kd++ +p aj00720 402 HQVVEQMVISDQIKAEDRANVLRALLLKHSHPSDEKDFS---------FP 442 rarsqasiGkklshhhaqsaskdeevpegpvtsgtpllpqeserdlemqt r++s++s+G++l+hhh+q+a++d++v+e p+++g+p+++ e+er++e+++ aj00720 443 RNISAGSLGSLLGHHHGQGAESDPHVTE-PLMGGVPETRLEVERERELPP 491 lhevgqsGvnCdissrdksKlelkllkKiPedaEAsnVLVGevDFLErPi ++++++ ++r+ksK+elkll+KiPe+aEA++VLVG+v+FL+rP+ aj00720 492 PAPPAG-------ITRSKSKHELKLLEKIPENAEATVVLVGCVEFLSRPT 534 vAFVRLqeAveLegvlEVPVPvRFLFvLLGPsgkgqdYHEiGRaiATLMs +AFVRL+eAveL++vlEVPVPvRFLF+LLGPs++++dYHEiGR+i+TLMs aj00720 535 MAFVRLREAVELDAVLEVPVPVRFLFLLLGPSSANMDYHEIGRSISTLMS 584 DevFhddAYlAkeReDLLagIdeFLDcsiVLPPgEvdpe<-* D++Fh++AYlA+eReDLL++I++FLDcs+VLPP+Ev++e aj00720 585 DKQFHEAAYLADEREDLLTAINAFLDCSVVLPPSEVQGE 623 PF00955.11.fs: domain 1 of 1, from 677 to 1172: score 1263.3, E = 0 *->pLeRTGRlFGGLIrDiKRryPwYlSDfrDALnpQcLAAiiFiYFAaL pL+RTGR+FGGLIrD++RryP+YlSDfrDAL+pQcLAA+iFiYFAaL aj00720 677 PLRRTGRPFGGLIRDVRRRYPHYLSDFRDALDPQCLAAVIFIYFAAL 723 SPAITFGGLLGekTeglmGvsEsllStAvqGivFsLlagQPLlIlGsTGP SPAITFGGLLGekT++l+GvsE+++StA+qG+vF+Ll++QPLl++G++GP aj00720 724 SPAITFGGLLGEKTQDLIGVSELIMSTALQGVVFCLLGAQPLLVIGFSGP 773 lLVFEealFkFCkdngldYLtfRvWIGlWlavivLvlVAtEgSfLVryiT lLVFEea+F+FC++n+l+YL++RvWIG+Wl++++L++VA+EgSfLVr+++ aj00720 774 LLVFEEAFFSFCSSNHLEYLVGRVWIGFWLVFLALLMVALEGSFLVRFVS 823 RFTqEiFaaLISlIFIYEtfkKLikifkahPlnssykldfltnysCvcvp RFTqEiFa+LISlIFIYEtf+KL+kif++hPl+ ++++++++ + aj00720 824 RFTQEIFAFLISLIFIYETFYKLVKIFQEHPLHGCSASNSSEVDG----- 868 Petvnseslaeskkltkttteidwslltksecekyggsldgtscgth.pp +e+++++ + ++ ++sl g+s++ +++ aj00720 869 -------------------GENMTWAGARPTLGPGNRSLAGQSGQGKpRG 899 qPntaLlSliLmfGTFfiAyfLKkFKNSrFFPgkvRrvIgDFgVpIaIli qPntaLlSl+Lm+GTFfiA+fL+kFKNSrFFPg++RrvIgDFgVpIaIli aj00720 900 QPNTALLSLVLMAGTFFIAFFLRKFKNSRFFPGRIRRVIGDFGVPIAILI 949 MvlvDyligdvyTqKLsVPsglkPTnptkRGWfInPlgkkggnPwWmmfa MvlvDy+i+d+yTqKLsVPsg+++T+p+kRGW+InPlg+k+++P+Wmm+a aj00720 950 MVLVDYSIEDTYTQKLSVPSGFSVTAPEKRGWVINPLGEKSPFPVWMMVA 999 AaiPALLvtILIFMeqQITalIVnkKErkLkKGsGfHLDLLlvavlggvC + +PA+Lv+ILIFMe+QIT+lI++kKEr+L+KGsGfHLDLLl++++gg+C aj00720 1000 SLLPAILVFILIFMETQITTLIISKKERMLQKGSGFHLDLLLIVAMGGIC 1049 slfGLPWlvAATVrSitHvnsLtveSkcsAPGekPqilgVrEQRVTGllV +lfGLPWl+AATVrS+tH+n+Ltv+Sk++APG+kP+i++V+EQRVTGllV aj00720 1050 ALFGLPWLAAATVRSVTHANALTVMSKAVAPGDKPKIQEVKEQRVTGLLV 1099 flLvGlSVlmapiLkfIPMpVLFGvFLYMGVaSLsGIQlfdRllLllMPa +lLvGlS++++++L++IP++VLFG+FLYMGV+SL+GIQ+++Rl+LllMP+ aj00720 1100 ALLVGLSIVIGDLLRQIPLAVLFGIFLYMGVTSLNGIQFYERLHLLLMPP 1149 KyqPDviYvRhVptwRvHLFTli<-* K++PDv Yv++V+t+R+HLFT++ aj00720 1150 KHHPDVTYVKKVRTLRMHLFTAL 1172 PF00955.11.ls: domain 1 of 1, from 677 to 1172: score 1265.0, E = 0 *->pLeRTGRlFGGLIrDiKRryPwYlSDfrDALnpQcLAAiiFiYFAaL pL+RTGR+FGGLIrD++RryP+YlSDfrDAL+pQcLAA+iFiYFAaL aj00720 677 PLRRTGRPFGGLIRDVRRRYPHYLSDFRDALDPQCLAAVIFIYFAAL 723 SPAITFGGLLGekTeglmGvsEsllStAvqGivFsLlagQPLlIlGsTGP SPAITFGGLLGekT++l+GvsE+++StA+qG+vF+Ll++QPLl++G++GP aj00720 724 SPAITFGGLLGEKTQDLIGVSELIMSTALQGVVFCLLGAQPLLVIGFSGP 773 lLVFEealFkFCkdngldYLtfRvWIGlWlavivLvlVAtEgSfLVryiT lLVFEea+F+FC++n+l+YL++RvWIG+Wl++++L++VA+EgSfLVr+++ aj00720 774 LLVFEEAFFSFCSSNHLEYLVGRVWIGFWLVFLALLMVALEGSFLVRFVS 823 RFTqEiFaaLISlIFIYEtfkKLikifkahPlnssykldfltnysCvcvp RFTqEiFa+LISlIFIYEtf+KL+kif++hPl+ ++++++++ + aj00720 824 RFTQEIFAFLISLIFIYETFYKLVKIFQEHPLHGCSASNSSEVDG----- 868 Petvnseslaeskkltkttteidwslltksecekyggsldgtscgth.pp +e+++++ + ++ ++sl g+s++ +++ aj00720 869 -------------------GENMTWAGARPTLGPGNRSLAGQSGQGKpRG 899 qPntaLlSliLmfGTFfiAyfLKkFKNSrFFPgkvRrvIgDFgVpIaIli qPntaLlSl+Lm+GTFfiA+fL+kFKNSrFFPg++RrvIgDFgVpIaIli aj00720 900 QPNTALLSLVLMAGTFFIAFFLRKFKNSRFFPGRIRRVIGDFGVPIAILI 949 MvlvDyligdvyTqKLsVPsglkPTnptkRGWfInPlgkkggnPwWmmfa MvlvDy+i+d+yTqKLsVPsg+++T+p+kRGW+InPlg+k+++P+Wmm+a aj00720 950 MVLVDYSIEDTYTQKLSVPSGFSVTAPEKRGWVINPLGEKSPFPVWMMVA 999 AaiPALLvtILIFMeqQITalIVnkKErkLkKGsGfHLDLLlvavlggvC + +PA+Lv+ILIFMe+QIT+lI++kKEr+L+KGsGfHLDLLl++++gg+C aj00720 1000 SLLPAILVFILIFMETQITTLIISKKERMLQKGSGFHLDLLLIVAMGGIC 1049 slfGLPWlvAATVrSitHvnsLtveSkcsAPGekPqilgVrEQRVTGllV +lfGLPWl+AATVrS+tH+n+Ltv+Sk++APG+kP+i++V+EQRVTGllV aj00720 1050 ALFGLPWLAAATVRSVTHANALTVMSKAVAPGDKPKIQEVKEQRVTGLLV 1099 flLvGlSVlmapiLkfIPMpVLFGvFLYMGVaSLsGIQlfdRllLllMPa +lLvGlS++++++L++IP++VLFG+FLYMGV+SL+GIQ+++Rl+LllMP+ aj00720 1100 ALLVGLSIVIGDLLRQIPLAVLFGIFLYMGVTSLNGIQFYERLHLLLMPP 1149 KyqPDviYvRhVptwRvHLFTli<-* K++PDv Yv++V+t+R+HLFT++ aj00720 1150 KHHPDVTYVKKVRTLRMHLFTAL 1172 //