hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-01570024/chunk_1/iprscan-20080807-01570024.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: aj00807 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00135.18.ls Carboxylesterase 527.2 1.7e-155 1 PF00135.18.fs Carboxylesterase 525.1 6.8e-155 1 PF07699.3.fs GCC2 and GCC3 72.0 3.4e-21 2 PF07699.3.ls GCC2 and GCC3 72.4 1.3e-18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07699.3.fs 2/2 271 316 .. 1 50 [] 70.5 1e-20 PF07699.3.ls 1/1 271 316 .. 1 50 [] 72.4 1.3e-18 PF00135.18.fs 1/1 994 1524 .. 1 592 [] 525.1 6.8e-155 PF00135.18.ls 1/1 994 1524 .. 1 592 [] 527.2 1.7e-155 Alignments of top-scoring domains: PF07699.3.fs: domain 2 of 2, from 271 to 316: score 70.5, E = 1e-20 *->GtysnsgtkpCepCPiGtYQpeegqdsCipCPpgknttTdktGatse G ys ++ C+pCP+G+YQ+++g+++C pCP+g +tT++ Ga s aj00807 271 GSYSQDEE--CIPCPVGFYQEQAGSLACVPCPVG--RTTISAGAFSQ 313 sdC<-* ++C aj00807 314 THC 316 PF07699.3.ls: domain 1 of 1, from 271 to 316: score 72.4, E = 1.3e-18 *->GtysnsgtkpCepCPiGtYQpeegqdsCipCPpgknttTdktGatse G ys ++ C+pCP+G+YQ+++g+++C pCP+g +tT++ Ga s aj00807 271 GSYSQDEE--CIPCPVGFYQEQAGSLACVPCPVG--RTTISAGAFSQ 313 sdC<-* ++C aj00807 314 THC 316 PF00135.18.fs: domain 1 of 1, from 994 to 1524: score 525.1, E = 6.8e-155 *->mllllllllllllflavvataptspedpvVeTsyvgGkvrGlrvkvd +++ll +++ +++++++ + + +G+ + ++v + aj00807 994 GISLLSYEASVPSVPISTHGR------------L-LGRSQAIQVGTS 1027 ggnkpvyaFlGIPYAkPPvGeLRFkkPqPpepWtgvldATkygpaCpQ.n + k+v++FlG+PYA+PP+ e+RF++P+P + Wtg +dA+k++++C+Q++ aj00807 1028 W--KQVDQFLGVPYAAPPLAERRFQAPEPLN-WTGSWDASKPRASCWQpG 1074 dlgfpgfslalhvgsemwnkntgksmSEDCLYLNVytPklasenkklPVm + ++++ +SEDCLYLNV+ P++ +n +V+ aj00807 1075 TRT--------------STSPG---VSEDCLYLNVFIPQNVAPN--ASVL 1105 VwIHGGGFqsGsassvslddydgpdlaasedVVVVtiNYRLGalGFLstg V++H + s + dg++laa ++ +VVt YR+G++GFLs g aj00807 1106 VFFHNTMDREESE---GWPAIDGSFLAAVGNLIVVTASYRVGVFGFLSSG 1152 dselppppGNaGLlDQvlALrWVqeNIaaFGGDPdnVTlFGeSAGAaSVs + e+ GN+GLlDQv+AL WVq +I FGGDP +V l+ GA +s aj00807 1153 SGEVS---GNWGLLDQVAALTWVQTHIRGFGGDPRRVSLAADRGGADVAS 1199 llllS.ppqsrGLFhrAIlqSGsalspwaitsppearnrakrlAkllGCp ++ll+ + + +LF+rA+l+ Gsalsp a+ s ++a+++a +lAk++ Cp aj00807 1200 IHLLTaRATNSQLFRRAVLMGGSALSPAAVISHERAQQQAIALAKEVSCP 1249 gedseelveCLRkksaeelldaqwklllleefgffplfpFgPVvdGdtpd +++s+e+v+CLR+k+a l+daq +ll ++g+f+ ++gPV+dG+ aj00807 1250 MSSSQEVVSCLRQKPANVLNDAQT--KLLAVSGPFH--YWGPVIDGH--- 1292 aflpkdPeellkegnfnkvPlliGvtsdEGllflayvl.dp.lsadllse fl ++P ++lk+ v+lliG+ +d+Gl+++a+ +++++s++ +s+ aj00807 1293 -FLREPPARALKRSLWVEVDLLIGSSQDDGLINRAKAVkQFeESQGRTSS 1341 idnedlflellpellpgase.steklreeiadaikeeYtdd.ddnseesr +++ f++ l+ +l g+++++ + +a ++Y ++++++ s+ aj00807 1342 KTA---FYQALQNSLGGEDSdA------RVEAAATWYYSLEhSTDDYASF 1382 rdalldllsDylFvcPilrlalaraakagspvYlYrFdyrssdsfnqyri ++al + Dy+++cPi+ +a+a+a++a+ + ++++ + ++ aj00807 1383 SRALENATRDYFIICPIIDMASAWAKRARGN--VFMYHAPENY------- 1423 nllwppwrgvsHgdelsYvFGnpls.k.ly.sseeeemlssrrmmrywtn ++++ ++++ +G+p+++ + ++s ee+ ls ++m+y+++ aj00807 1424 -----GHGSLELLADVQFALGLPFYpAyEGqFSLEEKSLS-LKIMQYFSH 1467 FAktGnPN.........ngessglvkWppytkeeqkyylpitllnitqk. F+++GnPN + + +++ ++ ++ ++++ p + e+ y+++ +l ++++ aj00807 1468 FIRSGNPNypyefsrkvPTFATPWPDFVPRAGGEN--YKEFSELLPNRQg 1515 lreedPrkvkcafw<-* l+ +d c fw aj00807 1516 LKKAD-----CSFW 1524 PF00135.18.ls: domain 1 of 1, from 994 to 1524: score 527.2, E = 1.7e-155 *->mllllllllllllflavvataptspedpvVeTsyvgGkvrGlrvkvd +++ll +++ +++++++ + + +G+ + ++v + aj00807 994 GISLLSYEASVPSVPISTHGR------------L-LGRSQAIQVGTS 1027 ggnkpvyaFlGIPYAkPPvGeLRFkkPqPpepWtgvldATkygpaCpQ.n + k+v++FlG+PYA+PP+ e+RF++P+P + Wtg +dA+k++++C+Q++ aj00807 1028 W--KQVDQFLGVPYAAPPLAERRFQAPEPLN-WTGSWDASKPRASCWQpG 1074 dlgfpgfslalhvgsemwnkntgksmSEDCLYLNVytPklasenkklPVm + ++++ +SEDCLYLNV+ P++ +n +V+ aj00807 1075 TRT--------------STSPG---VSEDCLYLNVFIPQNVAPN--ASVL 1105 VwIHGGGFqsGsassvslddydgpdlaasedVVVVtiNYRLGalGFLstg V++H + s + dg++laa ++ +VVt YR+G++GFLs g aj00807 1106 VFFHNTMDREESE---GWPAIDGSFLAAVGNLIVVTASYRVGVFGFLSSG 1152 dselppppGNaGLlDQvlALrWVqeNIaaFGGDPdnVTlFGeSAGAaSVs + e+ GN+GLlDQv+AL WVq +I FGGDP +V l+ GA +s aj00807 1153 SGEVS---GNWGLLDQVAALTWVQTHIRGFGGDPRRVSLAADRGGADVAS 1199 llllS.ppqsrGLFhrAIlqSGsalspwaitsppearnrakrlAkllGCp ++ll+ + + +LF+rA+l+ Gsalsp a+ s ++a+++a +lAk++ Cp aj00807 1200 IHLLTaRATNSQLFRRAVLMGGSALSPAAVISHERAQQQAIALAKEVSCP 1249 gedseelveCLRkksaeelldaqwklllleefgffplfpFgPVvdGdtpd +++s+e+v+CLR+k+a l+daq +ll ++g+f+ ++gPV+dG+ aj00807 1250 MSSSQEVVSCLRQKPANVLNDAQT--KLLAVSGPFH--YWGPVIDGH--- 1292 aflpkdPeellkegnfnkvPlliGvtsdEGllflayvl.dp.lsadllse fl ++P ++lk+ v+lliG+ +d+Gl+++a+ +++++s++ +s+ aj00807 1293 -FLREPPARALKRSLWVEVDLLIGSSQDDGLINRAKAVkQFeESQGRTSS 1341 idnedlflellpellpgase.steklreeiadaikeeYtdd.ddnseesr +++ f++ l+ +l g+++++ + +a ++Y ++++++ s+ aj00807 1342 KTA---FYQALQNSLGGEDSdA------RVEAAATWYYSLEhSTDDYASF 1382 rdalldllsDylFvcPilrlalaraakagspvYlYrFdyrssdsfnqyri ++al + Dy+++cPi+ +a+a+a++a+ + ++++ + ++ aj00807 1383 SRALENATRDYFIICPIIDMASAWAKRARGN--VFMYHAPENY------- 1423 nllwppwrgvsHgdelsYvFGnpls.k.ly.sseeeemlssrrmmrywtn ++++ ++++ +G+p+++ + ++s ee+ ls ++m+y+++ aj00807 1424 -----GHGSLELLADVQFALGLPFYpAyEGqFSLEEKSLS-LKIMQYFSH 1467 FAktGnPN.........ngessglvkWppytkeeqkyylpitllnitqk. F+++GnPN + + +++ ++ ++ ++++ p + e+ y+++ +l ++++ aj00807 1468 FIRSGNPNypyefsrkvPTFATPWPDFVPRAGGEN--YKEFSELLPNRQg 1515 lreedPrkvkcafw<-* l+ +d c fw aj00807 1516 LKKAD-----CSFW 1524 //