# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oaj00822.fasta.nr -Q aj00822.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 aj00822, 171 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6822681 sequences Expectation_n fit: rho(ln(x))= 5.7266+/-0.000199; mu= 6.0146+/- 0.011 mean_var=105.3492+/-20.320, 0's: 49 Z-trim: 53 B-trim: 3027 in 1/65 Lambda= 0.124956 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62088644|dbj|BAD92769.1| eukaryotic translation ( 171) 1128 212.6 2e-53 gi|6010112|emb|CAB57260.1| guanine nucleotide exch ( 522) 917 175.0 1.2e-41 gi|62822294|gb|AAY14843.1| unknown [Homo sapiens] ( 522) 917 175.0 1.2e-41 gi|6012058|emb|CAB57305.1| guanine nucleotide exch ( 542) 917 175.1 1.3e-41 gi|6010114|emb|CAB57261.1| guanine nucleotide exch ( 543) 917 175.1 1.3e-41 gi|119620993|gb|EAX00588.1| eukaryotic translation ( 543) 917 175.1 1.3e-41 gi|10441948|gb|AAG17251.1|AF218009_1 unknown [Homo ( 229) 905 172.5 3.1e-41 gi|119620994|gb|EAX00589.1| eukaryotic translation ( 508) 905 172.9 5.4e-41 gi|28381357|sp|Q9UI10.2|EI2BD_HUMAN Translation in ( 523) 905 172.9 5.5e-41 gi|6563202|gb|AAF17195.1|AF112207_1 translation in ( 523) 905 172.9 5.5e-41 gi|109102396|ref|XP_001094256.1| PREDICTED: eukary ( 411) 902 172.2 6.8e-41 gi|109102398|ref|XP_001094134.1| PREDICTED: eukary ( 434) 902 172.3 7e-41 gi|33337571|gb|AAQ13438.1|AF057699_1 EIF-2B-delta- ( 520) 901 172.2 9.1e-41 gi|119620997|gb|EAX00592.1| eukaryotic translation ( 585) 901 172.2 9.9e-41 gi|114576632|ref|XP_001157413.1| PREDICTED: eukary ( 507) 897 171.4 1.5e-40 gi|114576630|ref|XP_515356.2| PREDICTED: eukaryoti ( 522) 897 171.4 1.5e-40 gi|114576634|ref|XP_001157464.1| PREDICTED: eukary ( 543) 897 171.5 1.5e-40 gi|109102400|ref|XP_001094020.1| PREDICTED: eukary ( 397) 890 170.1 3e-40 gi|119620995|gb|EAX00590.1| eukaryotic translation ( 492) 886 169.4 5.7e-40 gi|194220874|ref|XP_001502328.2| PREDICTED: eukary ( 523) 768 148.2 1.5e-33 gi|122140333|sp|Q3T058.1|EI2BD_BOVIN Translation i ( 524) 753 145.5 9.8e-33 gi|73979946|ref|XP_860642.1| PREDICTED: similar to ( 524) 745 144.0 2.7e-32 gi|73979950|ref|XP_532909.2| PREDICTED: similar to ( 545) 745 144.1 2.7e-32 gi|2506382|sp|P41111|EI2BD_RABIT Translation initi ( 523) 707 137.2 3.1e-30 gi|471329|emb|CAA53204.1| translation initiation f ( 527) 707 137.2 3.1e-30 gi|18255869|gb|AAH21884.1| Eukaryotic translation ( 524) 694 134.8 1.6e-29 gi|2494307|sp|Q61749|EI2BD_MOUSE Translation initi ( 524) 694 134.8 1.6e-29 gi|529428|gb|AAA68046.1| guanine nucleotide exchan ( 544) 694 134.9 1.6e-29 gi|188219553|ref|NP_001120827.1| eukaryotic transl ( 544) 694 134.9 1.6e-29 gi|2494308|sp|Q63186|EI2BD_RAT Translation initiat ( 524) 692 134.5 2e-29 gi|118089107|ref|XP_423512.2| PREDICTED: hypotheti ( 550) 447 90.3 4.1e-16 gi|47224272|emb|CAG09118.1| unnamed protein produc ( 533) 309 65.4 1.2e-08 gi|55962424|emb|CAI11537.1| novel protein similar ( 541) 284 60.9 2.8e-07 gi|55962425|emb|CAI11538.1| novel protein similar ( 540) 279 60.0 5.3e-07 gi|111305700|gb|AAI21466.1| Eukaryotic translation ( 546) 248 54.5 2.6e-05 gi|4884138|emb|CAB43277.1| hypothetical protein [H ( 394) 245 53.8 3e-05 gi|76780301|gb|AAI06222.1| LOC496301 protein [Xeno ( 568) 228 50.9 0.00032 gi|57033170|gb|AAH88810.1| LOC496301 protein [Xeno ( 568) 228 50.9 0.00032 gi|112419036|gb|AAI22498.1| LOC496301 protein [Xen ( 569) 228 50.9 0.00032 >>gi|62088644|dbj|BAD92769.1| eukaryotic translation ini (171 aa) initn: 1128 init1: 1128 opt: 1128 Z-score: 1114.4 bits: 212.6 E(): 2e-53 Smith-Waterman score: 1128; 100.000% identity (100.000% similar) in 171 aa overlap (1-171:1-171) 10 20 30 40 50 60 aj0082 YLFPFGIVGEEQYPMSVSQAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPETGSAVSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 YLFPFGIVGEEQYPMSVSQAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPETGSAVSA 10 20 30 40 50 60 70 80 90 100 110 120 aj0082 AQCQGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKGEQGGPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AQCQGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKGEQGGPPP 70 80 90 100 110 120 130 140 150 160 170 aj0082 KASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVGSGFGAWLERA ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVGSGFGAWLERA 130 140 150 160 170 >>gi|6010112|emb|CAB57260.1| guanine nucleotide exchange (522 aa) initn: 917 init1: 917 opt: 917 Z-score: 902.6 bits: 175.0 E(): 1.2e-41 Smith-Waterman score: 917; 100.000% identity (100.000% similar) in 141 aa overlap (20-160:26-166) 10 20 30 40 50 aj0082 YLFPFGIVGEEQYPMSVSQAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPET ::::::::::::::::::::::::::::::::::: gi|601 MAAVAVAVREDSGSGMKAELPPGPGAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPET 10 20 30 40 50 60 60 70 80 90 100 110 aj0082 GSAVSAAQCQGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|601 GSAVSAAQCQGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKGE 70 80 90 100 110 120 120 130 140 150 160 170 aj0082 QGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVGSGFGAWLERA :::::::::::::::::::::::::::::::::::::::::::::: gi|601 QGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVPTRKDYGSKVSLFS 130 140 150 160 170 180 gi|601 HLPQYSRQNSLTQFMTIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQQVIQDYT 190 200 210 220 230 240 >>gi|62822294|gb|AAY14843.1| unknown [Homo sapiens] (522 aa) initn: 917 init1: 917 opt: 917 Z-score: 902.6 bits: 175.0 E(): 1.2e-41 Smith-Waterman score: 917; 100.000% identity (100.000% similar) in 141 aa overlap (20-160:26-166) 10 20 30 40 50 aj0082 YLFPFGIVGEEQYPMSVSQAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPET ::::::::::::::::::::::::::::::::::: gi|628 MAAVAVAVREDSGSGMKAELPPGPGAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPET 10 20 30 40 50 60 60 70 80 90 100 110 aj0082 GSAVSAAQCQGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 GSAVSAAQCQGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKGE 70 80 90 100 110 120 120 130 140 150 160 170 aj0082 QGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVGSGFGAWLERA :::::::::::::::::::::::::::::::::::::::::::::: gi|628 QGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVPTRKDYGSKVSLFS 130 140 150 160 170 180 gi|628 HLPQYSRQNSLTQFMSIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQQVIQDYT 190 200 210 220 230 240 >>gi|6012058|emb|CAB57305.1| guanine nucleotide exchange (542 aa) initn: 917 init1: 917 opt: 917 Z-score: 902.4 bits: 175.1 E(): 1.3e-41 Smith-Waterman score: 917; 100.000% identity (100.000% similar) in 141 aa overlap (20-160:46-186) 10 20 30 40 aj0082 YLFPFGIVGEEQYPMSVSQAVGREMTKEEKLQLRKEKKQQKKKRKEEKG :::::::::::::::::::::::::::::: gi|601 PSRSLSGSLCALFSDADSGSGMKAELPPGPAVGREMTKEEKLQLRKEKKQQKKKRKEEKG 20 30 40 50 60 70 50 60 70 80 90 100 aj0082 AEPETGSAVSAAQCQGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|601 AEPETGSAVSAAQCQGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQ 80 90 100 110 120 130 110 120 130 140 150 160 aj0082 ARKGEQGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVGSGFGAWLE ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|601 ARKGEQGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVPTRKDYGSK 140 150 160 170 180 190 170 aj0082 RA gi|601 VSLFSHLPQYSRQNSLTQFMTIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQQV 200 210 220 230 240 250 >>gi|6010114|emb|CAB57261.1| guanine nucleotide exchange (543 aa) initn: 917 init1: 917 opt: 917 Z-score: 902.4 bits: 175.1 E(): 1.3e-41 Smith-Waterman score: 917; 100.000% identity (100.000% similar) in 141 aa overlap (20-160:47-187) 10 20 30 40 aj0082 YLFPFGIVGEEQYPMSVSQAVGREMTKEEKLQLRKEKKQQKKKRKEEKG :::::::::::::::::::::::::::::: gi|601 SRSLSGSLCALFSDADSGSGMKAELPPGPGAVGREMTKEEKLQLRKEKKQQKKKRKEEKG 20 30 40 50 60 70 50 60 70 80 90 100 aj0082 AEPETGSAVSAAQCQGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|601 AEPETGSAVSAAQCQGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQ 80 90 100 110 120 130 110 120 130 140 150 160 aj0082 ARKGEQGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVGSGFGAWLE ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|601 ARKGEQGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVPTRKDYGSK 140 150 160 170 180 190 170 aj0082 RA gi|601 VSLFSHLPQYSRQNSLTQFMTIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQQV 200 210 220 230 240 250 >>gi|119620993|gb|EAX00588.1| eukaryotic translation ini (543 aa) initn: 917 init1: 917 opt: 917 Z-score: 902.4 bits: 175.1 E(): 1.3e-41 Smith-Waterman score: 917; 100.000% identity (100.000% similar) in 141 aa overlap (20-160:47-187) 10 20 30 40 aj0082 YLFPFGIVGEEQYPMSVSQAVGREMTKEEKLQLRKEKKQQKKKRKEEKG :::::::::::::::::::::::::::::: gi|119 SRSLSGSLCALFSDADSGSGMKAELPPGPGAVGREMTKEEKLQLRKEKKQQKKKRKEEKG 20 30 40 50 60 70 50 60 70 80 90 100 aj0082 AEPETGSAVSAAQCQGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AEPETGSAVSAAQCQGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQ 80 90 100 110 120 130 110 120 130 140 150 160 aj0082 ARKGEQGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVGSGFGAWLE ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ARKGEQGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVPTRKDYGSK 140 150 160 170 180 190 170 aj0082 RA gi|119 VSLFSHLPQYSRQNSLTQFMSIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQQV 200 210 220 230 240 250 >>gi|10441948|gb|AAG17251.1|AF218009_1 unknown [Homo sap (229 aa) initn: 669 init1: 669 opt: 905 Z-score: 895.5 bits: 172.5 E(): 3.1e-41 Smith-Waterman score: 905; 99.296% identity (99.296% similar) in 142 aa overlap (20-160:11-152) 10 20 30 40 50 60 aj0082 YLFPFGIVGEEQYPMSVSQAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPETGSAVSA ::::::::::::::::::::::::::::::::::::::::: gi|104 MKAELPPGPGAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPETGSAVSA 10 20 30 40 50 70 80 90 100 110 aj0082 AQCQ-GPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKGEQGGPP :::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 AQCQVGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKGEQGGPP 60 70 80 90 100 110 120 130 140 150 160 170 aj0082 PKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVGSGFGAWLERA ::::::::::::::::::::::::::::::::::::::::: gi|104 PKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVPTRKDYGSKVSLFSHLPQY 120 130 140 150 160 170 gi|104 SRQNSLTQFMSIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQQVIQDYTTPA 180 190 200 210 220 >>gi|119620994|gb|EAX00589.1| eukaryotic translation ini (508 aa) initn: 669 init1: 669 opt: 905 Z-score: 891.1 bits: 172.9 E(): 5.4e-41 Smith-Waterman score: 905; 99.296% identity (99.296% similar) in 142 aa overlap (20-160:11-152) 10 20 30 40 50 60 aj0082 YLFPFGIVGEEQYPMSVSQAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPETGSAVSA ::::::::::::::::::::::::::::::::::::::::: gi|119 MKAELPPGPGAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPETGSAVSA 10 20 30 40 50 70 80 90 100 110 aj0082 AQCQ-GPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKGEQGGPP :::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AQCQVGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKGEQGGPP 60 70 80 90 100 110 120 130 140 150 160 170 aj0082 PKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVGSGFGAWLERA ::::::::::::::::::::::::::::::::::::::::: gi|119 PKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVPTRKDYGSKVSLFSHLPQY 120 130 140 150 160 170 gi|119 SRQNSLTQFMSIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQQVIQDYTTPPNE 180 190 200 210 220 230 >>gi|28381357|sp|Q9UI10.2|EI2BD_HUMAN Translation initia (523 aa) initn: 669 init1: 669 opt: 905 Z-score: 890.9 bits: 172.9 E(): 5.5e-41 Smith-Waterman score: 905; 99.296% identity (99.296% similar) in 142 aa overlap (20-160:26-167) 10 20 30 40 50 aj0082 YLFPFGIVGEEQYPMSVSQAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPET ::::::::::::::::::::::::::::::::::: gi|283 MAAVAVAVREDSGSGMKAELPPGPGAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPET 10 20 30 40 50 60 60 70 80 90 100 110 aj0082 GSAVSAAQCQ-GPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKG :::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::: gi|283 GSAVSAAQCQVGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKG 70 80 90 100 110 120 120 130 140 150 160 170 aj0082 EQGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVGSGFGAWLERA ::::::::::::::::::::::::::::::::::::::::::::::: gi|283 EQGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVPTRKDYGSKVSLF 130 140 150 160 170 180 gi|283 SHLPQYSRQNSLTQFMSIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQQVIQDY 190 200 210 220 230 240 >>gi|6563202|gb|AAF17195.1|AF112207_1 translation initia (523 aa) initn: 669 init1: 669 opt: 905 Z-score: 890.9 bits: 172.9 E(): 5.5e-41 Smith-Waterman score: 905; 99.296% identity (99.296% similar) in 142 aa overlap (20-160:26-167) 10 20 30 40 50 aj0082 YLFPFGIVGEEQYPMSVSQAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPET ::::::::::::::::::::::::::::::::::: gi|656 MAAVAVAVREDSGSGMKAELPPGPGAVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPET 10 20 30 40 50 60 60 70 80 90 100 110 aj0082 GSAVSAAQCQ-GPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKG :::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::: gi|656 GSAVSAAQCQVGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKG 70 80 90 100 110 120 120 130 140 150 160 170 aj0082 EQGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVGSGFGAWLERA ::::::::::::::::::::::::::::::::::::::::::::::: gi|656 EQGGPPPKASPSTAGETPSGVKRLPEYPQVDDLLLRRLVKKPERQQVPTRKDYGSKVSLF 130 140 150 160 170 180 gi|656 SHLPQYSRQNSLTQFMSIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQQVIQDY 190 200 210 220 230 240 171 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 02:00:44 2008 done: Thu Aug 7 02:03:38 2008 Total Scan time: 605.890 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]