hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-02152998/chunk_1/iprscan-20080807-02152998.nocrc
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Query sequence: aj01160
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00431.11.fs CUB domain                                     381.1   2.7e-115   2
PF00431.11.ls CUB domain                                     385.0     1e-112   2
PF00008.17.fs EGF-like domain                                 26.8    1.3e-06   1
PF00008.17.ls EGF-like domain                                 28.7    1.8e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00008.17.fs   1/1      95   130 ..     1    38 []    26.8  1.3e-06
PF00008.17.ls   1/1      95   130 ..     1    38 []    28.7  1.8e-05
PF00431.11.fs   1/2     135   244 ..     1   116 []   207.2  1.5e-62
PF00431.11.ls   1/2     135   244 ..     1   116 []   209.2  9.1e-60
PF00431.11.ls   2/2     248   361 ..     1   116 []   175.9  9.4e-50
PF00431.11.fs   2/2     248   361 ..     1   116 []   173.9    2e-52

Alignments of top-scoring domains:
PF00008.17.fs: domain 1 of 1, from 95 to 130: score 26.8, E = 1.3e-06
                   *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-*
                      Cs++ng+C+    Cv+t g+y+C+C  G++l+ + ++C   
     aj01160    95    CSKDNGGCQQ--DCVNTFGSYECQCRSGFVLHDNKHDC    130  

PF00008.17.ls: domain 1 of 1, from 95 to 130: score 28.7, E = 1.8e-05
                   *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-*
                      Cs++ng+C+    Cv+t g+y+C+C  G++l+ + ++C   
     aj01160    95    CSKDNGGCQQ--DCVNTFGSYECQCRSGFVLHDNKHDC    130  

PF00431.11.fs: domain 1 of 2, from 135 to 244: score 207.2, E = 1.5e-62
                   *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF
                      C++   +t++sG+ItSPn+P+ +Yp +keC+W I+ +pg+r ++LtF
     aj01160   135    CDHK--VTSTSGTITSPNWPD-KYPSKKECTWAISSTPGHR-VKLTF 177  

                   qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm
                    ++d+E++++ C+YD++E++DG+++ +p+lGrfCG s++Pe++  t+++m
     aj01160   178 MEMDIESQPE-CAYDHLEVFDGRDAKAPVLGRFCG-SKKPEPVLATGSRM 225  

                   tikFvsDssiqkrGFkaty<-*
                   +++F+sD+s+q++GF+a++   
     aj01160   226 FLRFYSDNSVQRKGFQASH    244  

PF00431.11.ls: domain 1 of 2, from 135 to 244: score 209.2, E = 9.1e-60
                   *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF
                      C++   +t++sG+ItSPn+P+ +Yp +keC+W I+ +pg+r ++LtF
     aj01160   135    CDHK--VTSTSGTITSPNWPD-KYPSKKECTWAISSTPGHR-VKLTF 177  

                   qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm
                    ++d+E++++ C+YD++E++DG+++ +p+lGrfCG s++Pe++  t+++m
     aj01160   178 MEMDIESQPE-CAYDHLEVFDGRDAKAPVLGRFCG-SKKPEPVLATGSRM 225  

                   tikFvsDssiqkrGFkaty<-*
                   +++F+sD+s+q++GF+a++   
     aj01160   226 FLRFYSDNSVQRKGFQASH    244  

PF00431.11.ls: domain 2 of 2, from 248 to 361: score 175.9, E = 9.4e-50
                   *->CGgvl..dltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisL
                      CGg+++ d+++++ + +++ + n +Yp  ++C+W I+a++gy  ++L
     aj01160   248    CGGQVraDVKTKDLYSHAQFGDN-NYPGGVDCEWVIVAEEGYG-VEL 292  

                   tFqdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsn
                    Fq F++E++++ CgYDy E +DG++s++p lGr+CG sg+Pe ++S ++
     aj01160   293 VFQTFEVEEETD-CGYDYMELFDGYDSTAPRLGRYCG-SGPPEEVYSAGD 340  

                   qmtikFvsDssiqkrGFkaty<-*
                   ++++kF+sD++i+k+GF+++y   
     aj01160   341 SVLVKFHSDDTITKKGFHLRY    361  

PF00431.11.fs: domain 2 of 2, from 248 to 361: score 173.9, E = 2e-52
                   *->CGgvl..dltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisL
                      CGg+++ d+++++ + +++ + n +Yp  ++C+W I+a++gy  ++L
     aj01160   248    CGGQVraDVKTKDLYSHAQFGDN-NYPGGVDCEWVIVAEEGYG-VEL 292  

                   tFqdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsn
                    Fq F++E++++ CgYDy E +DG++s++p lGr+CG sg+Pe ++S ++
     aj01160   293 VFQTFEVEEETD-CGYDYMELFDGYDSTAPRLGRYCG-SGPPEEVYSAGD 340  

                   qmtikFvsDssiqkrGFkaty<-*
                   ++++kF+sD++i+k+GF+++y   
     aj01160   341 SVLVKFHSDDTITKKGFHLRY    361  

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