hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-02152998/chunk_1/iprscan-20080807-02152998.nocrc
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Query sequence: aj01160
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00042                                                 325.5    3.6e-93   2
SM00179                                                  42.3    6.3e-08   1
SM00181                                                  30.3    0.00027   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00179    1/1      91   131 ..     1    34 []    42.3  6.3e-08
SM00181    1/1      94   131 ..     1    32 []    30.3  0.00027
SM00042    1/2     135   247 ..     1   144 []   179.2    4e-49
SM00042    2/2     248   364 ..     1   144 []   146.3  3.1e-39

Alignments of top-scoring domains:
SM00179: domain 1 of 1, from 91 to 131: score 42.3, E = 6.3e-08
                   *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<
                      D DEC+++++ Cq+      C+N+ GSY+C+C+ G+  +++++ C+ 
     aj01160    91    DKDECskdngGCQQ-----DCVNtFGSYECqCRSGFVlhdnkHDCK  131  

                   -*
                     
     aj01160     -    -    

SM00181: domain 1 of 1, from 94 to 131: score 30.3, E = 0.00027
                   *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<
                      eC++++++C++        C+++ +sy+C+C+  G+ ++++++ C+ 
     aj01160    94    ECSkdngGCQQ-------DCVntfgSYECqCR-SGFVLhdnkhDCK  131  

                   -*
                     
     aj01160     -    -    

SM00042: domain 1 of 2, from 135 to 247: score 179.2, E = 4e-49
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      C + +t +s      GtitSPn+P++     Yp+ +eC+W Is +pG
     aj01160   135    CDHKVTSTS------GTITSPNWPDK-----YPSKKECTWAISSTPG 170  

                   yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
                   +r++L+F +   +d+Es ++         C+yD++e++DG++ +++p+lG
     aj01160   171 HRVKLTFME---MDIESQPE---------CAYDHLEVFDGRD-AKAPVLG 207  

                   ntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav
                       rfCGs+++++++ + +++m+++F sD+svq     ++GF+a++ ++
     aj01160   208 ----RFCGSKkpEpVLAT-GSRMFLRFYSDNSVQ-----RKGFQASHATE 247  

                   <-*
                      
     aj01160     -     -    

SM00042: domain 2 of 2, from 248 to 364: score 146.3, E = 3.1e-39
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      CGg ++a+     +   +++  + ++    +Yp + +C+W+I+a++G
     aj01160   248    CGGQVRADVK---TKDLYSHAQFGDN----NYPGGVDCEWVIVAEEG 287  

                   yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
                   y +eL F+    F++E + +         C+yDy e +DG++  ++p+lG
     aj01160   288 YGVELVFQT---FEVEEETD---------CGYDYMELFDGYD-STAPRLG 324  

                   ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav<
                       r+CGs++p+ ++S+++s++v+F+sD +++     k+GF++rY+++ 
     aj01160   325 ----RYCGSGpPeEVYSAGDSVLVKFHSDDTIT-----KKGFHLRYTST  364  

                   -*
                     
     aj01160     -    -    

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