hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-02205108/chunk_1/iprscan-20080807-02205108.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: aj01273 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07679.6.fs Immunoglobulin I-set domain 73.4 8.3e-21 2 PF00047.15.ls Immunoglobulin domain 73.6 5.8e-19 3 PF07679.6.ls Immunoglobulin I-set domain 72.7 1.1e-18 2 PF00047.15.fs Immunoglobulin domain 68.0 6.6e-18 3 PF08205.3.fs CD80-like C2-set immunoglobulin domain 32.5 1.4e-08 2 PF07686.7.fs Immunoglobulin V-set domain 19.2 6e-05 3 PF08205.3.ls CD80-like C2-set immunoglobulin domain 25.2 0.00019 1 PF07686.7.ls Immunoglobulin V-set domain 21.7 0.00032 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07686.7.ls 1/2 38 175 .. 1 141 [] 14.8 0.0016 PF08205.3.fs 1/2 178 259 .. 1 95 [. 25.3 1.5e-06 PF08205.3.ls 1/1 178 265 .. 1 101 [] 25.2 0.00019 PF07679.6.fs 1/2 277 359 .. 1 96 [] 46.2 7.1e-13 PF07679.6.ls 1/2 277 359 .. 1 96 [] 48.1 2.8e-11 PF00047.15.fs 2/3 291 344 .. 1 65 [] 27.9 6.8e-07 PF00047.15.ls 2/3 291 344 .. 1 65 [] 29.6 9.9e-06 PF07679.6.ls 2/2 363 446 .. 1 96 [] 24.6 9.5e-06 PF07679.6.fs 2/2 372 446 .. 10 96 .] 27.2 2.5e-07 PF00047.15.ls 3/3 377 431 .. 1 65 [] 39.9 8.4e-09 PF00047.15.fs 3/3 377 431 .. 1 65 [] 38.1 1.1e-09 Alignments of top-scoring domains: PF07686.7.ls: domain 1 of 2, from 38 to 175: score 14.8, E = 0.0016 *->qsqvtqepprWGLLLASLfW.p.t.............svtvaeGgsv ++ +t+ p fW + +++++ + ++s+++ eG+ v aj01273 38 MIFLTA-LPL--------FWiMiSasrgghwgawmpsSISAFEGTCV 75 tLpCtysGtfddsssssgtfsiy..Wyrq.qppgkgpeliiisyysyyst ++pC + ++ +++ Wy+++ p + p ++ aj01273 76 SIPCRFD-----FPDELRPAVVHgvWYFNsPYPKNYPPVVF--------- 111 segngtvgerfkgrvtlsgnpskgdfsLtIsnlqlsDsGtYyCavsns.. ++++ v+e+f+gr +l g+ + +++L +sn++++ G Yy ++ aj01273 112 KSRTQVVHESFQGRSRLLGDLGLRNCTLLLSNVSPELGGKYYFRGDLGgy 161 nelvfgggtrLtVl<-* n ++f + +L ++ aj01273 162 NQYTFSEHSVLDIV 175 PF08205.3.fs: domain 1 of 2, from 178 to 259: score 25.3, E = 1.5e-06 *->peIeppasllegeksenlevvatCvlpysagGkPa..pritWyldgk p I+ p++ + g ev++ C + + +P+ +p ++W+++ + aj01273 178 PNIVVPPEVVAGT-----EVEVSCM---VPDNCPElrPELSWLGHEG 216 elvpeekteaittsseqdpesglytvtStLklvpsredhgqsltCqvsyg e++ + e + + v S L++vp+re++g+ l Cq+s + aj01273 217 LG------EPAVLGRLREDEGTWVQV-SLLHFVPTREANGHRLGCQASFP 259 <-* aj01273 - - PF08205.3.ls: domain 1 of 1, from 178 to 265: score 25.2, E = 0.00019 *->peIeppasllegeksenlevvatCvlpysagGkPa..pritWyldgk p I+ p++ + g ev++ C + + +P+ +p ++W+++ + aj01273 178 PNIVVPPEVVAGT-----EVEVSCM---VPDNCPElrPELSWLGHEG 216 elvpeekteaittsseqdpesglytvtStLklvpsredhgqsltCqvsyg e++ + e + + v S L++vp+re++g+ l Cq+s + aj01273 217 LG------EPAVLGRLREDEGTWVQV-SLLHFVPTREANGHRLGCQASFP 259 alrgsk<-* + aj01273 260 NTTLQF 265 PF07679.6.fs: domain 1 of 2, from 277 to 359: score 46.2, E = 7.1e-13 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+++ ++ve+ eG+ +++ C ++ +P+P +W +dG l++ aj01273 277 PVIVEMNSSVEAIEGSHVSLLCGADSNPPPLLTWMRDGTVLRE---- 319 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< v ++ L+ +v+p+ G+Y C A+N +G++ ++ L V aj01273 320 ----AVAESL-----LLELEEVTPAEDGVYACLAENAYGQDNRTVGLSV 359 -* aj01273 - - PF07679.6.ls: domain 1 of 2, from 277 to 359: score 48.1, E = 2.8e-11 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+++ ++ve+ eG+ +++ C ++ +P+P +W +dG l++ aj01273 277 PVIVEMNSSVEAIEGSHVSLLCGADSNPPPLLTWMRDGTVLRE---- 319 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< v ++ L+ +v+p+ G+Y C A+N +G++ ++ L V aj01273 320 ----AVAESL-----LLELEEVTPAEDGVYACLAENAYGQDNRTVGLSV 359 -* aj01273 - - PF00047.15.fs: domain 2 of 3, from 291 to 344: score 27.9, E = 6.8e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++v+L C + ++p++ +tW r+g+ l + v aj01273 291 GSHVSLLCGA--DSNPPPLLTWMRDGTvLReAVAESLL--------- 326 tsLtitnvtpeDggtYtCvv<-* L + +vtp +g+Y C + aj01273 327 --LELEEVTPAEDGVYACLA 344 PF00047.15.ls: domain 2 of 3, from 291 to 344: score 29.6, E = 9.9e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++v+L C + ++p++ +tW r+g+ l + v aj01273 291 GSHVSLLCGA--DSNPPPLLTWMRDGTvLReAVAESLL--------- 326 tsLtitnvtpeDggtYtCvv<-* L + +vtp +g+Y C + aj01273 327 --LELEEVTPAEDGVYACLA 344 PF07679.6.ls: domain 2 of 2, from 363 to 446: score 24.6, E = 9.5e-06 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P ++ +++ eGe+++ C + +P+P + fK q ls aj01273 363 PWKPTVNGTMVAVEGETVSILCSTQSNPDPILTIFKEKQILST---- 405 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< + +++ L+ + v p+D G+Y CvA+N +G+ + ++L V aj01273 406 ----VIYESE----LQLELPAVSPEDDGEYWCVAENQYGQRATAFNLSV 446 -* aj01273 - - PF07679.6.fs: domain 2 of 2, from 372 to 446: score 27.2, E = 2.5e-07 *->veVqeGesarfeCkVtGtPePtVsWfKdGqplssvllpsdrfkvtyd +++ eGe+++ C + +P+P + fK q ls + ++ aj01273 372 MVAVEGETVSILCSTQSNPDPILTIFKEKQILST--------VIYES 410 gGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* + L+ + v p+D G+Y CvA+N +G+ + ++L V aj01273 411 E----LQLELPAVSPEDDGEYWCVAENQYGQRATAFNLSV 446 PF00047.15.ls: domain 3 of 3, from 377 to 431: score 39.9, E = 8.4e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge+v++ Cs+ ++pd+ +t +++++ l + + + + aj01273 377 GETVSILCST--QSNPDPILTIFKEKQiLStVIYESELQ-------- 413 tsLtitnvtpeDggtYtCvv<-* L + +v+peD+g+Y+Cv+ aj01273 414 --LELPAVSPEDDGEYWCVA 431 PF00047.15.fs: domain 3 of 3, from 377 to 431: score 38.1, E = 1.1e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge+v++ Cs+ ++pd+ +t +++++ l + + + + aj01273 377 GETVSILCST--QSNPDPILTIFKEKQiLStVIYESELQ-------- 413 tsLtitnvtpeDggtYtCvv<-* L + +v+peD+g+Y+Cv+ aj01273 414 --LELPAVSPEDDGEYWCVA 431 //