hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-02205108/chunk_1/iprscan-20080807-02205108.nocrc
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Query sequence: aj01273
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00409                                                 122.2    5.8e-32   4
SM00408                                                 102.8      4e-26   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/4      64   172 ..     1    58 []    23.8    0.023
SM00409    2/4     181   274 ..     1    58 []    10.7       12
SM00409    3/4     283   360 ..     1    58 []    39.8  3.7e-07
SM00408    1/2     289   349 ..     1    56 []    57.2  2.2e-12
SM00409    4/4     369   447 ..     1    58 []    47.8  1.4e-09
SM00408    2/2     375   436 ..     1    56 []    45.6  6.5e-09

Alignments of top-scoring domains:
SM00409: domain 1 of 4, from 64 to 172: score 23.8, E = 0.023
                   *->pp.vtvkeGesvtLtC.as..........titWy.............
                      p+++++ eG  v+++C++  ++   +   +  Wy +++ +++ ++  
     aj01273    64    PSsISAFEGTCVSIPCrFDfpdelrpavvHGVWYfnspypknyppvv 110  

                   ............................LtI.nvtpeDsesgGtYtCaat
                    +++++  + + +++++  ++ + ++ +L ++nv+pe     G Y+ +  
     aj01273   111 fksrtqvvhesfqgrsrllgdlglrnctLLLsNVSPELG---GKYYFRGD 157  

                   ..sgsasseqgttLtVl<-*
                    ++ +++   + + +Vl   
     aj01273   158 lgGYNQYT--FSEHSVL    172  

SM00409: domain 2 of 4, from 181 to 274: score 10.7, E = 12
                   *->pp.vtvkeGesvtLtC.as........titWy...............
                        + +v++G  v+ +C ++++ +   ++++W+++ + + +   ++ +
     aj01273   181    VVpPEVVAGTEVEVSCmVPdncpelrpELSWLgheglgepavlgrlr 227  

                   ...........LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLt
                    + ++  + + L++ + ++++        C+a+ +++  + ++   +   
     aj01273   228 edegtwvqvslLHFvPTREANG---HRLGCQASfpntTLQFEG--YASMD 272  

                   Vl<-*
                   V+   
     aj01273   273 VK    274  

SM00409: domain 3 of 4, from 283 to 360: score 39.8, E = 3.7e-07
                   *->pp.vtvkeGesvtLtC.as.....titWy...............LtI
                       ++v++ eG+ v+L C+a +++++ +tW+++++  +     +  L++
     aj01273   283    NSsVEAIEGSHVSLLCgADsnpppLLTWMrdgtvlreavaesllLEL 329  

                   .nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   ++vtp+     G+Y C a++ +g++    ++ L+V    
     aj01273   330 eEVTPAED---GVYACLAEnaYGQDNR--TVGLSVM    360  

SM00408: domain 1 of 2, from 289 to 349: score 57.2, E = 2.2e-12
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp....sgstLtiknvsle
                      +eG  V+L C+a+ +p p  tW ++g+ l +    +  L++++v+++
     aj01273   289    IEGSHVSLLCGADSNPPPLLTWMRdGTVLReavaESLLLELEEVTPA 335  

                   DsGlYtCvArNsvg<-*
                    +G+Y+C+A+N+ g   
     aj01273   336 EDGVYACLAENAYG    349  

SM00409: domain 4 of 4, from 369 to 447: score 47.8, E = 1.4e-09
                   *->pp.vtvkeGesvtLtC.as.....titWy................Lt
                       ++++++eGe+v++ C+ ++++++ +t ++ ++  ++    +  +L+
     aj01273   369    NGtMVAVEGETVSILCsTQsnpdpILTIFkekqilstviyeselqLE 415  

                   I.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   ++ v+peD    G+Y+C+a++ +g+      ++L+V+   
     aj01273   416 LpAVSPEDD---GEYWCVAEnqYGQRAT--AFNLSVE    447  

SM00408: domain 2 of 2, from 375 to 436: score 45.6, E = 6.5e-09
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.....sgstLtiknvsl
                       eG++V++ C    +p+p  t +k+ + l++   +s+  L++  vs+
     aj01273   375    VEGETVSILCSTQSNPDPILTIFKeKQILStviyeSELQLELPAVSP 421  

                   eDsGlYtCvArNsvg<-*
                   eD+G+Y+CvA+N  g   
     aj01273   422 EDDGEYWCVAENQYG    436  

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