hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090617/iprscan-20090617-19490001/chunk_1/iprscan-20090617-19490001.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: aj01304 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 543.6 2e-160 1 PF07714.7.fs Protein tyrosine kinase 541.7 7.3e-160 1 PF00069.15.ls Protein kinase domain 161.1 2.6e-45 1 PF00069.15.fs Protein kinase domain 159.2 4e-45 1 PF00047.15.ls Immunoglobulin domain 106.1 9.3e-29 3 PF00047.15.fs Immunoglobulin domain 100.4 4.8e-27 3 PF07679.6.fs Immunoglobulin I-set domain 87.1 8.6e-25 4 PF07679.6.ls Immunoglobulin I-set domain 73.8 5.1e-19 2 PF07686.7.fs Immunoglobulin V-set domain 31.4 2.2e-08 2 PF07686.7.ls Immunoglobulin V-set domain 33.9 5.3e-07 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00047.15.ls 1/3 143 200 .. 1 65 [] 29.1 1.4e-05 PF00047.15.fs 1/3 143 200 .. 1 65 [] 27.3 1e-06 PF07686.7.ls 1/2 211 335 .. 1 141 [] 11.9 0.0031 PF07679.6.ls 1/2 246 334 .. 1 96 [] 49.3 1.2e-11 PF00047.15.fs 2/3 258 319 .. 1 65 [] 37.5 1.5e-09 PF00047.15.ls 2/3 258 319 .. 1 65 [] 39.4 1.1e-08 PF07679.6.fs 2/4 260 334 .. 17 96 .] 59.6 9.2e-17 PF07679.6.ls 2/2 342 445 .. 1 96 [] 24.4 9.9e-06 PF07686.7.ls 2/2 345 446 .. 1 141 [] 21.9 0.0003 PF07686.7.fs 2/2 345 446 .. 1 141 [] 20.2 3e-05 PF00047.15.fs 3/3 357 430 .. 1 65 [] 35.7 5e-09 PF00047.15.ls 3/3 357 430 .. 1 65 [] 37.6 4e-08 PF07714.7.fs 1/1 561 837 .. 1 272 [] 541.7 7.3e-160 PF00069.15.fs 1/1 561 837 .. 1 287 [] 159.2 4e-45 PF00069.15.ls 1/1 561 837 .. 1 287 [] 161.1 2.6e-45 PF07714.7.ls 1/1 561 837 .. 1 272 [] 543.6 2e-160 Alignments of top-scoring domains: PF00047.15.ls: domain 1 of 3, from 143 to 200: score 29.1, E = 1.4e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ v L+C +g p+ W ++g++l ++++v + +++ aj01304 143 GDAVELSCPPP-GGGPMGPTVWVKDGTgLVpSERVLVGPQR------ 182 tsLtitnvtpeDggtYtCvv<-* L+++n++ eD+g Y+C+ aj01304 183 --LQVLNASHEDSGAYSCRQ 200 PF00047.15.fs: domain 1 of 3, from 143 to 200: score 27.3, E = 1e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ v L+C +g p+ W ++g++l ++++v + +++ aj01304 143 GDAVELSCPPP-GGGPMGPTVWVKDGTgLVpSERVLVGPQR------ 182 tsLtitnvtpeDggtYtCvv<-* L+++n++ eD+g Y+C+ aj01304 183 --LQVLNASHEDSGAYSCRQ 200 PF07686.7.ls: domain 1 of 2, from 211 to 335: score 11.9, E = 0.0031 *->qsqvtqepprWGLLLASLfWpt......................... ++ vt p+ ++++++++++ ++++ +++ + +++ aj01304 211 SVRVTD-APS-----------Sgddedgedeaedtgvdtgapywtrp 245 ......svtvaeGgsvtLpCtysGtfddsssssgtfsiyWyrqqppgkgp ++ +++++ v+ +v+++C +++ ++ si+W + aj01304 246 ermdkkLLAVPAANTVRFRCPAA---GNP----TP-SISWLK-NGR---- 282 eliiisyysyystsegngtvgerfkgrvtlsgnps.kgdfsLtIsnlqls +f+g ++ g + +sL + ++ +s aj01304 283 ----------------------EFRGEHRIGGIKLrHQQWSLVMESVVPS 310 DsGtYyCavsnsnelvfgggtrLtVl<-* D G Y+C+v n +++ + ++L Vl aj01304 311 DRGNYTCVVENK-FGSIRQTYTLDVL 335 PF07679.6.ls: domain 1 of 2, from 246 to 334: score 49.3, E = 1.2e-11 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp + ++k+ + V ++rf C + G+P+P++sW+K+G++ + aj01304 246 ERMDKKL--LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG---- 286 sdr...fkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeL ++r +++k ++ +L++ v p+D G YtCv++N++G+ + +L aj01304 287 EHRiggIKLRHQQ----WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL 332 tV<-* V aj01304 333 DV 334 PF00047.15.fs: domain 2 of 3, from 258 to 319: score 37.5, E = 1.5e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty ++v+++C + g+p ++++Wl+ng + ++++++++ ++ +++ aj01304 258 ANTVRFRCPA--AGNPTPSISWLKNGReFRgEHRIGgIKLRHQQWS- 301 qtsLtitnvtpeDggtYtCvv<-* L++ +v p+D g+YtCvv aj01304 302 ---LVMESVVPSDRGNYTCVV 319 PF00047.15.ls: domain 2 of 3, from 258 to 319: score 39.4, E = 1.1e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty ++v+++C + g+p ++++Wl+ng + ++++++++ ++ +++ aj01304 258 ANTVRFRCPA--AGNPTPSISWLKNGReFRgEHRIGgIKLRHQQWS- 301 qtsLtitnvtpeDggtYtCvv<-* L++ +v p+D g+YtCvv aj01304 302 ---LVMESVVPSDRGNYTCVV 319 PF07679.6.fs: domain 2 of 4, from 260 to 334: score 59.6, E = 9.2e-17 *->sarfeCkVtGtPePtVsWfKdGqplssvllpsdr...fkvtydgGsg ++rf C + G+P+P++sW+K+G++ + ++r +++k ++ aj01304 260 TVRFRCPAAGNPTPSISWLKNGREFRG----EHRiggIKLRHQQ--- 299 tytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* +L++ v p+D G YtCv++N++G+ + +L V aj01304 300 -WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 334 PF07679.6.ls: domain 2 of 2, from 342 to 445: score 24.4, E = 9.9e-06 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKd....Gqpls P ++ ++++ G++++f CkV+ + +P ++W+K + +G+++ aj01304 342 PILQAGLsANQTAVLGSDVEFHCKVYSDAQPHIQWLKHvevnGSKVG 388 svllpsdrfkvtydg.......GsgtytLtIsnvqpdDsGkYtCvAtNsa + ++ vt+ ++ + +++ + L nv+ +D+G+YtC A Ns aj01304 389 P----DGTPYVTVLKtaganttDKELEVLSLHNVTFEDAGEYTCLAGNSI 434 GeaeasaeLtV<-* G + sa L V aj01304 435 GFSHHSAWLVV 445 PF07686.7.ls: domain 2 of 2, from 345 to 446: score 21.9, E = 0.0003 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss q +++ t+++G +v+++C++ +d aj01304 345 QAGLSA----------------NQTAVLGSDVEFHCKVY---SDA-- 370 ssgtfsiyWyrqqpp........gkgpeliiisyysyystsegngtvger ++ +i+W + + ++++ +++++p + +t + n+t +e aj01304 371 --QP-HIQWLK-HVEvngskvgpDGTPYVTV------LKTAGANTTDKEL 410 fkgrvtlsgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLt L+++n++ +D G Y+C ns + ++ +L+ aj01304 411 EV---------------LSLHNVTFEDAGEYTCLAGNS-IGFSHHSAWLV 444 Vl<-* Vl aj01304 445 VL 446 PF07686.7.fs: domain 2 of 2, from 345 to 446: score 20.2, E = 3e-05 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss q +++ t+++G +v+++C++ +d aj01304 345 QAGLSA----------------NQTAVLGSDVEFHCKVY---SDA-- 370 ssgtfsiyWyrqqpp........gkgpeliiisyysyystsegngtvger ++ +i+W + + ++++ +++++p + +t + n+t +e aj01304 371 --QP-HIQWLK-HVEvngskvgpDGTPYVTV------LKTAGANTTDKEL 410 fkgrvtlsgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLt L+++n++ +D G Y+C ns + ++ +L+ aj01304 411 EV---------------LSLHNVTFEDAGEYTCLAGNS-IGFSHHSAWLV 444 Vl<-* Vl aj01304 445 VL 446 PF00047.15.fs: domain 3 of 3, from 357 to 430: score 35.7, E = 5e-09 *->GesvtLtCsvsgfgppdvtvtWlr....ngk.lt.gvlvtssenngd G++v + C v ++ +++++Wl++ + ng +++++ + ++++ ++ aj01304 357 GSDVEFHCKV--YSDAQPHIQWLKhvevNGSkVGpDGTPYVTVLKTA 401 styqt.....sLtitnvtpeDggtYtCvv<-* + +t+++ ++L+++nvt eD+g+YtC + aj01304 402 GANTTdkeleVLSLHNVTFEDAGEYTCLA 430 PF00047.15.ls: domain 3 of 3, from 357 to 430: score 37.6, E = 4e-08 *->GesvtLtCsvsgfgppdvtvtWlr....ngk.lt.gvlvtssenngd G++v + C v ++ +++++Wl++ + ng +++++ + ++++ ++ aj01304 357 GSDVEFHCKV--YSDAQPHIQWLKhvevNGSkVGpDGTPYVTVLKTA 401 styqt.....sLtitnvtpeDggtYtCvv<-* + +t+++ ++L+++nvt eD+g+YtC + aj01304 402 GANTTdkeleVLSLHNVTFEDAGEYTCLA 430 PF07714.7.fs: domain 1 of 1, from 561 to 837: score 541.7, E = 7.3e-160 *->lklgkkLGeGaFGeVykGtlkg...sgdgteikVAVKtLkeigasee l+lgk LGeG+FG V+++++ g +++ + ++VAVK+Lk+ +a+++ aj01304 561 LTLGKPLGEGCFGQVVMAEAIGidkDRAAKPVTVAVKMLKD-DATDK 606 eieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymeg + + d+ +E+++Mk +G+H+Ni++LlG+ct+ g+P ly+ +Ey+++ aj01304 607 D--LSDLVSEMEMMKMIGKHKNIINLLGACTQ-GGP----LYVLVEYAAK 649 GdLldfLrkhr.............egrpLtlkdLlsfalQiAkGMeYLes G+L++fLr++r+++ + + ++ ++++++Lt kdL+s a+Q+A+GMeYL+s aj01304 650 GNLREFLRARRppgldysfdtckpPEEQLTFKDLVSCAYQVARGMEYLAS 699 knfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvk ++++HRDLAARN+LV+e++v+KI+DFGLaRd++n dyY +k+++g+lPvk aj01304 700 QKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNLDYY-KKTTNGRLPVK 748 WmAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlelly WmAPE+l+++++t++SDVWSFGVlLWEiftlG++P Ypg+++ee+ +ll aj01304 749 WMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSP-YPGIPVEELFKLL- 796 edGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* ++G+R+++P nC+ +lY++M++CW++ P++RPtF++lve+L aj01304 797 KEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQLVEDL 837 PF00069.15.fs: domain 1 of 1, from 561 to 837: score 159.2, E = 4e-45 *->yelleklGsGsfGtVykakhkgtgk.......iVAvKiikkrkeksk ++l+++lG+G fG+V a +g k++ ++ +VAvK +k + ++++ aj01304 561 LTLGKPLGEGCFGQVVMAEAIGIDKdraakpvTVAVKMLKDDATDKD 607 kdktarrlsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvl +++ + E +++k++++H+NI+ l+++++ ++ ly+ Ey+ +G aj01304 608 L--SDLVS-EMEMMKMIgKHKNIINLLGACTQGGPLYVLVEYAAKG---- 650 dLfdyls...........e..trrkgpllfsedeakkialQilrgleYLH L ++l+ +++++ + + ++ + l + +++ ++a+Q++rg+eYL aj01304 651 NLREFLRarrppgldysfDtcKPPEEQL--TFKDLVSCAYQVARGMEYLA 698 sngiiHRDLKPeNILldnngvvdaflKiaDFGlAkkls.t.sss.lttfv s+++iHRDL N+L+ +++v KiaDFGlA+ + +++ + ++t aj01304 699 SQKCIHRDLAARNVLVTEDNVM----KIADFGLARDVHnLdYYKkTTNGR 744 GTpwYmAPEvllggngygtkvDvWSlGvilyellt.GkpPFsgevqds.l +mAPE l ++ y++ +DvWS+Gv+l+e +t G P++g + aj01304 745 LPVKWMAPEALF-DRVYTHQSDVWSFGVLLWEIFTlGGSPYPGI---PvE 790 dqlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkD ++l+++ + + + ++ ++ +++ c++ aj01304 791 ELFKLLKEGHRMDKPANCT-----------------HDLYMIMRECWHAA 823 PskRltaeeilqHPwf<-* Ps+R+t+++++++ + aj01304 824 PSQRPTFKQLVED--L 837 PF00069.15.ls: domain 1 of 1, from 561 to 837: score 161.1, E = 2.6e-45 *->yelleklGsGsfGtVykakhkgtgk.......iVAvKiikkrkeksk ++l+++lG+G fG+V a +g k++ ++ +VAvK +k + ++++ aj01304 561 LTLGKPLGEGCFGQVVMAEAIGIDKdraakpvTVAVKMLKDDATDKD 607 kdktarrlsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvl +++ + E +++k++++H+NI+ l+++++ ++ ly+ Ey+ +G aj01304 608 L--SDLVS-EMEMMKMIgKHKNIINLLGACTQGGPLYVLVEYAAKG---- 650 dLfdyls...........e..trrkgpllfsedeakkialQilrgleYLH L ++l+ +++++ + + ++ + l + +++ ++a+Q++rg+eYL aj01304 651 NLREFLRarrppgldysfDtcKPPEEQL--TFKDLVSCAYQVARGMEYLA 698 sngiiHRDLKPeNILldnngvvdaflKiaDFGlAkkls.t.sss.lttfv s+++iHRDL N+L+ +++v KiaDFGlA+ + +++ + ++t aj01304 699 SQKCIHRDLAARNVLVTEDNVM----KIADFGLARDVHnLdYYKkTTNGR 744 GTpwYmAPEvllggngygtkvDvWSlGvilyellt.GkpPFsgevqds.l +mAPE l ++ y++ +DvWS+Gv+l+e +t G P++g + aj01304 745 LPVKWMAPEALF-DRVYTHQSDVWSFGVLLWEIFTlGGSPYPGI---PvE 790 dqlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkD ++l+++ + + + ++ ++ +++ c++ aj01304 791 ELFKLLKEGHRMDKPANCT-----------------HDLYMIMRECWHAA 823 PskRltaeeilqHPwf<-* Ps+R+t+++++++ + aj01304 824 PSQRPTFKQLVED--L 837 PF07714.7.ls: domain 1 of 1, from 561 to 837: score 543.6, E = 2e-160 *->lklgkkLGeGaFGeVykGtlkg...sgdgteikVAVKtLkeigasee l+lgk LGeG+FG V+++++ g +++ + ++VAVK+Lk+ +a+++ aj01304 561 LTLGKPLGEGCFGQVVMAEAIGidkDRAAKPVTVAVKMLKD-DATDK 606 eieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymeg + + d+ +E+++Mk +G+H+Ni++LlG+ct+ g+P ly+ +Ey+++ aj01304 607 D--LSDLVSEMEMMKMIGKHKNIINLLGACTQ-GGP----LYVLVEYAAK 649 GdLldfLrkhr.............egrpLtlkdLlsfalQiAkGMeYLes G+L++fLr++r+++ + + ++ ++++++Lt kdL+s a+Q+A+GMeYL+s aj01304 650 GNLREFLRARRppgldysfdtckpPEEQLTFKDLVSCAYQVARGMEYLAS 699 knfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvk ++++HRDLAARN+LV+e++v+KI+DFGLaRd++n dyY +k+++g+lPvk aj01304 700 QKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNLDYY-KKTTNGRLPVK 748 WmAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlelly WmAPE+l+++++t++SDVWSFGVlLWEiftlG++P Ypg+++ee+ +ll aj01304 749 WMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSP-YPGIPVEELFKLL- 796 edGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* ++G+R+++P nC+ +lY++M++CW++ P++RPtF++lve+L aj01304 797 KEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQLVEDL 837 //