hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090617/iprscan-20090617-19490001/chunk_1/iprscan-20090617-19490001.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: aj01304 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00219 527.4 6.1e-154 1 SM00220 186.9 2e-51 1 SM00409 137.8 1.2e-36 3 SM00408 131.1 1.2e-34 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/3 135 215 .. 1 58 [] 30.4 0.00025 SM00408 1/3 141 205 .. 1 56 [] 24.0 0.017 SM00409 2/3 250 335 .. 1 58 [] 48.0 1.2e-09 SM00408 2/3 256 324 .. 1 56 [] 64.9 1e-14 SM00409 3/3 349 446 .. 1 58 [] 59.4 4.7e-13 SM00408 3/3 355 435 .. 1 56 [] 42.2 7e-08 SM00219 1/1 561 837 .. 1 280 [] 527.4 6.1e-154 SM00220 1/1 561 841 .. 1 231 [] 186.9 2e-51 Alignments of top-scoring domains: SM00409: domain 1 of 3, from 135 to 215: score 30.4, E = 0.00025 *->pp.vtvkeGesvtLtC.as.......titWy................ +++++ G+ v+L+C+ +++++ ++t++ +++++ ++ + +++ aj01304 135 QEqLVFGSGDAVELSCpPPgggpmgpTVWVKdgtglvpservlvgpq 181 .LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-* +L++ n++ eDs G Y C+ + + + + ++V+ aj01304 182 rLQVlNASHEDS---GAYSCRQRlTQRVLC--HFSVRVT 215 SM00408: domain 1 of 3, from 141 to 205: score 24.0, E = 0.017 *->leGqsVtLtCp.asgdpvpnItWlk.gkplp.......sgstLtikn +G++V+L Cp+ g p W+k+g+ l ++++ + ++L++ n aj01304 141 GSGDAVELSCPpPGGGPMGPTVWVKdGTGLVpservlvGPQRLQVLN 187 vsleDsGlYtCvArNsvg<-* +s eDsG Y+C+ r aj01304 188 ASHEDSGAYSCRQRLTQR 205 SM00409: domain 2 of 3, from 250 to 335: score 48.0, E = 1.2e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. + + v + +v+++C+a+++++++i+W+++++ ++ ++ ++ + + aj01304 250 KKlLAVPAANTVRFRCpAAgnptpSISWLkngrefrgehriggiklr 296 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++ +L++++v p+D G+YtC+++++ gs+ + + tL Vl aj01304 297 hqqwsLVMeSVVPSDR---GNYTCVVEnkFGSIRQ--TYTLDVL 335 SM00408: domain 2 of 3, from 256 to 324: score 64.9, E = 1e-14 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL ++V+++Cpa+g+p+p+I+Wlk+g + ++++ ++ + ++ ++L aj01304 256 PAANTVRFRCPAAGNPTPSISWLKnGREFRgehriggiklrhQQWSL 302 tiknvsleDsGlYtCvArNsvg<-* ++v ++D+G+YtCv++N+ g aj01304 303 VMESVVPSDRGNYTCVVENKFG 324 SM00409: domain 3 of 3, from 349 to 446: score 59.4, E = 4.7e-13 *->pp.vtvkeGesvtLtC.as.....titWy.................. + ++t+++G++v+++C++ ++ ++i+W+++ ++++ ++++++ aj01304 349 SAnQTAVLGSDVEFHCkVYsdaqpHIQWLkhvevngskvgpdgtpyv 395 .................LtI.nvtpeDsesgGtYtCaat.sgsasseqgt + ++ + +++++ L ++nvt+eD+ G+YtC a +s s +++ aj01304 396 tvlktaganttdkelevLSLhNVTFEDA---GEYTCLAGnSIGFSH-HSA 441 tLtVl<-* +L Vl aj01304 442 WLVVL 446 SM00408: domain 3 of 3, from 355 to 435: score 42.2, E = 7e-08 *->leGqsVtLtCpasgdpvpnItWlk.....gkplp............. G +V++ C++ d p I+Wlk+ + +g+++ +++++ + ++ aj01304 355 VLGSDVEFHCKVYSDAQPHIQWLKhvevnGSKVGpdgtpyvtvlkta 401 .......sgstLtiknvsleDsGlYtCvArNsvg<-* + +++++ L++ nv++eD+G+YtC+A Ns+g aj01304 402 ganttdkELEVLSLHNVTFEDAGEYTCLAGNSIG 435 SM00219: domain 1 of 1, from 561 to 837: score 527.4, E = 6.1e-154 *->ltlgkkLGeGaFGeVykGtlk..........ieVAVKtLkeda.... ltlgk LGeG+FG+V+ +++++ ++++ ++++VAVK+Lk+da++++ aj01304 561 LTLGKPLGEGCFGQVVMAEAIgidkdraakpVTVAVKMLKDDAtdkd 607 keeFlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymeg + ++ +E+++Mk++G kH+Ni++LlG+ct++ +Pl++++Ey+++ aj01304 608 LSDLVSEMEMMKMIG-KHKNIINLLGACTQG-------GPLYVLVEYAAK 649 GdLldyLrknrpk...............lslsdLlsfAlQIAkGMeYLes G+L+++Lr++rp + + + ++ ++++++l+ +dL+s A+Q+A+GMeYL+s aj01304 650 GNLREFLRARRPPgldysfdtckppeeqLTFKDLVSCAYQVARGMEYLAS 699 knfvHRDLAARNcLvgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkgg ++++HRDLAARN+Lv+e++v+KI+DFGL+Rd+++ dyY+k++ aj01304 700 QKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNL-------DYYKKTT- 741 kggktllPirWmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgei +g+ lP++WmAPE+l+d+++t++SDVWSFGVlLWEiftlG++PYpg aj01304 742 -NGR--LPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPG-- 786 qqfmsneevleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPe ++ ee++++lk+G+R++kP+n C+ +lY++M++CW++ P+ aj01304 787 ---IPVEELFKLLKEGHRMDKPAN--------CTHDLYMIMRECWHAAPS 825 dRPtFselverl<-* +RPtF++lve+l aj01304 826 QRPTFKQLVEDL 837 SM00220: domain 1 of 1, from 561 to 841: score 186.9, E = 2e-51 *->YellkklGkGaFGkVylardkk.......tgrlvAiKvik....... +l+k+lG+G FG+V a ++ ++++ vA+K++k++ ++++ aj01304 561 LTLGKPLGEGCFGQVVMAEAIGidkdraaKPVTVAVKMLKddatdkd 607 .erilrEikiLkk..dHPNIVkLydvfed.dklylVmEyceGdlGdLfdl ++ +E++++k+ ++H+NI++L++++ ++ ly+ Ey+ G+L+++ aj01304 608 lSDLVSEMEMMKMigKHKNIINLLGACTQgGPLYVLVEYAAK--GNLREF 655 lkkrgrrglr..........kvlsE.earfyfrQilsaLeYLHsqgIiHR l+ r+++gl+ + ++ ++++ +l+ ++ + ++Q+++++eYL sq+ iHR aj01304 656 LRARRPPGLDysfdtckppeEQLTFkDLVSCAYQVARGMEYLASQKCIHR 705 DLKPeNiLLds..hvKlaDFGlArql.........ttfvGTpeYmAPEvl DL N+L++++++ K+aDFGlAr +++ + +++t +mAPE l aj01304 706 DLAARNVLVTEdnVMKIADFGLARDVhnldyykktTNGRLPVKWMAPEAL 755 ...gYgkpavDiWSlGcilyEllt.GkpPFp..qldlifkkig....... ++ Y++ +D+WS+G++l+E +t G P+p+ ++++fk+++++++ ++ aj01304 756 fdrVYTH-QSDVWSFGVLLWEIFTlGGSPYPgiPVEELFKLLKeghrmdk 804 ....SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-* + + ++++ +++ +++ P++R+t +++ e ++ + aj01304 805 pancTHDLYMIMRECWHAAPSQRPTFkQLVE-----DLDRVL 841 //