hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-02271239/chunk_1/iprscan-20080807-02271239.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: aj01345 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00621.11.fs RhoGEF domain 306.2 2.2e-90 1 PF00621.11.ls RhoGEF domain 308.1 1.5e-89 1 PF00620.17.fs RhoGAP domain 248.3 5.7e-73 1 PF00620.17.ls RhoGAP domain 250.3 3.8e-72 1 PF09036.1.ls Bcr-Abl oncoprotein oligomerisation dom 219.2 8.3e-63 1 PF09036.1.fs Bcr-Abl oncoprotein oligomerisation dom 217.3 3.1e-62 1 PF00168.20.fs C2 domain 45.6 5.3e-13 1 PF00168.20.ls C2 domain 47.5 4.2e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF09036.1.fs 1/1 17 95 .. 1 89 [] 217.3 3.1e-62 PF09036.1.ls 1/1 17 95 .. 1 89 [] 219.2 8.3e-63 PF00621.11.ls 1/1 518 706 .. 1 207 [] 308.1 1.5e-89 PF00621.11.fs 1/1 518 706 .. 1 207 [] 306.2 2.2e-90 PF00168.20.fs 1/1 929 1018 .. 1 88 [] 45.6 5.3e-13 PF00168.20.ls 1/1 929 1018 .. 1 88 [] 47.5 4.2e-11 PF00620.17.ls 1/1 1084 1237 .. 1 155 [] 250.3 3.8e-72 PF00620.17.fs 1/1 1084 1237 .. 1 155 [] 248.3 5.7e-73 Alignments of top-scoring domains: PF09036.1.fs: domain 1 of 1, from 17 to 95: score 217.3, E = 3.1e-62 *->mVePvgfaeawraqfpdWfseppfmelrsvgDrWvslrsPleqeler mV+Pvgfaeaw+aqfpd sepp+melrsvgD +eqeler aj01345 17 MVDPVGFAEAWKAQFPD--SEPPRMELRSVGD--------IEQELER 53 CkaSiRrLEqEvNkERFRMIYLQTLLAKErkSYDrQRWGFrr<-* CkaSiRrLEqEvN+ERFRMIYLQTLLAKE+kSYDrQRWGFrr aj01345 54 CKASIRRLEQEVNQERFRMIYLQTLLAKEKKSYDRQRWGFRR 95 PF09036.1.ls: domain 1 of 1, from 17 to 95: score 219.2, E = 8.3e-63 *->mVePvgfaeawraqfpdWfseppfmelrsvgDrWvslrsPleqeler mV+Pvgfaeaw+aqfpd sepp+melrsvgD +eqeler aj01345 17 MVDPVGFAEAWKAQFPD--SEPPRMELRSVGD--------IEQELER 53 CkaSiRrLEqEvNkERFRMIYLQTLLAKErkSYDrQRWGFrr<-* CkaSiRrLEqEvN+ERFRMIYLQTLLAKE+kSYDrQRWGFrr aj01345 54 CKASIRRLEQEVNQERFRMIYLQTLLAKEKKSYDRQRWGFRR 95 PF00621.11.ls: domain 1 of 1, from 518 to 706: score 308.1, E = 1.5e-89 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF vl+++l++E++Y+++Le+l+ +mkpL++aa++s+p+Lt+++ietiF aj01345 518 VLSGILASEETYLSHLEALLL-PMKPLKAAATTSQPVLTSQQIETIF 563 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk ++++++ye+h+eF++ +L++r++++ +++qr+GdlF++l aj01345 564 FKVPELYEIHKEFYD-GLFPRVQQW-----------SHQQRVGDLFQKL- 600 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd a++l+vY+++++n+++A+e++ek ++++n+qFae++++++a+sn++Akd aj01345 601 ASQLGVYRAFVDNYGVAMEMAEK--CCQANAQFAEISENLRARSNKDAKD 648 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda +++k++L++LL+kPv+R++r++L+L++LLkhtp+ +++++++L++al++ aj01345 649 PTTKNSLETLLYKPVDRVTRSTLVLHDLLKHTPA--SHPDHPLLQDALRI 696 lqdlaksiNe<-* +q++++siNe aj01345 697 SQNFLSSINE 706 PF00621.11.fs: domain 1 of 1, from 518 to 706: score 306.2, E = 2.2e-90 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF vl+++l++E++Y+++Le+l+ +mkpL++aa++s+p+Lt+++ietiF aj01345 518 VLSGILASEETYLSHLEALLL-PMKPLKAAATTSQPVLTSQQIETIF 563 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk ++++++ye+h+eF++ +L++r++++ +++qr+GdlF++l aj01345 564 FKVPELYEIHKEFYD-GLFPRVQQW-----------SHQQRVGDLFQKL- 600 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd a++l+vY+++++n+++A+e++ek ++++n+qFae++++++a+sn++Akd aj01345 601 ASQLGVYRAFVDNYGVAMEMAEK--CCQANAQFAEISENLRARSNKDAKD 648 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda +++k++L++LL+kPv+R++r++L+L++LLkhtp+ +++++++L++al++ aj01345 649 PTTKNSLETLLYKPVDRVTRSTLVLHDLLKHTPA--SHPDHPLLQDALRI 696 lqdlaksiNe<-* +q++++siNe aj01345 697 SQNFLSSINE 706 PF00168.20.fs: domain 1 of 1, from 929 to 1018: score 45.6, E = 5.3e-13 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt L+V v++A + + +s+ Y++++++ + +k kT+v ++t aj01345 929 LNVIVHSATGFKQ------SSNLYCTLEVDSFGYFvNKAKTRVYRDT 969 lNPvWNEtFtFevpppdlqetLeieVyDydrfgr..........ddflGe P WNE+F++e ++ q L+i +y+++ + + ++++++++d ++G+ aj01345 970 AEPNWNEEFEIE--LEGSQT-LRILCYEKCYNKTkipkedgestDRLMGK 1016 vs<-* + aj01345 1017 GQ 1018 PF00168.20.ls: domain 1 of 1, from 929 to 1018: score 47.5, E = 4.2e-11 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt L+V v++A + + +s+ Y++++++ + +k kT+v ++t aj01345 929 LNVIVHSATGFKQ------SSNLYCTLEVDSFGYFvNKAKTRVYRDT 969 lNPvWNEtFtFevpppdlqetLeieVyDydrfgr..........ddflGe P WNE+F++e ++ q L+i +y+++ + + ++++++++d ++G+ aj01345 970 AEPNWNEEFEIE--LEGSQT-LRILCYEKCYNKTkipkedgestDRLMGK 1016 vs<-* + aj01345 1017 GQ 1018 PF00620.17.ls: domain 1 of 1, from 1084 to 1237: score 250.3, E = 3.8e-72 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P iv++C+e++e+rG++++GIyRvsG ++ i++L++afd + ++++ aj01345 1084 PYIVRQCVEEIERRGMEEVGIYRVSGVATDIQALKAAFDVNNKDVSV 1130 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea +e dv+++A+ LKl++ReLPePL+t+e+y++f e + + d+ ++ ++ aj01345 1131 MMSEMDVNAIAGTLKLYFRELPEPLFTDEFYPNFAE-GIALSDPVAKESC 1179 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr + ll +LP+aN t+ +Ll hL+rVa+ ++vNkM+ hNLA+vFgPtLlr aj01345 1180 MLNLLLSLPEANLLTFLFLLDHLKRVAEKEAVNKMSLHNLATVFGPTLLR 1229 ppdgdsad<-* p++++s++ aj01345 1230 PSEKESKL 1237 PF00620.17.fs: domain 1 of 1, from 1084 to 1237: score 248.3, E = 5.7e-73 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P iv++C+e++e+rG++++GIyRvsG ++ i++L++afd + ++++ aj01345 1084 PYIVRQCVEEIERRGMEEVGIYRVSGVATDIQALKAAFDVNNKDVSV 1130 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea +e dv+++A+ LKl++ReLPePL+t+e+y++f e + + d+ ++ ++ aj01345 1131 MMSEMDVNAIAGTLKLYFRELPEPLFTDEFYPNFAE-GIALSDPVAKESC 1179 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr + ll +LP+aN t+ +Ll hL+rVa+ ++vNkM+ hNLA+vFgPtLlr aj01345 1180 MLNLLLSLPEANLLTFLFLLDHLKRVAEKEAVNKMSLHNLATVFGPTLLR 1229 ppdgdsad<-* p++++s++ aj01345 1230 PSEKESKL 1237 //