hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-02271239/chunk_1/iprscan-20080807-02271239.nocrc
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Query sequence: aj01345
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00324                                                 248.3    6.1e-70   1
SM00325                                                 181.0    1.1e-49   1
SM00239                                                  55.0    9.9e-12   1
SM00233                                                  43.2    3.5e-08   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00325     1/1     518   706 ..     1   211 []   181.0  1.1e-49
SM00233     1/1     725   884 ..     1    82 []    43.2  3.5e-08
SM00239     1/1     928  1033 ..     1    92 []    55.0  9.9e-12
SM00324     1/1    1081  1265 ..     1   193 []   248.3  6.1e-70

Alignments of top-scoring domains:
SM00325: domain 1 of 1, from 518 to 706: score 181.0, E = 1.1e-49
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      vl  +l++E++Y+ +L+ l+   +kpLk  a++s+ p+l+ ++++t+
     aj01345   518    VLSGILASEETYLSHLEALLL-PMKPLKAAATTSQ-PVLTSQQIETI 562  

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   F+  ++e+ye+H++F+d L  rv++w                +++r+gd+
     aj01345   563 FF-KVPELYEIHKEFYDGLFPRVQQWS---------------HQQRVGDL 596  

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                   F+kl   ++++ +Y ++++n+  a+e+ +k  +++ n +F++  + + ++
     aj01345   597 FQKL---ASQLGVYRAFVDNYGVAMEMAEK--CCQANAQFAEISENLRAR 641  

                   pncrsk.sea.rltLeslLikPvQRltkYpLLLkellkhtppdhedredL
                   +n + k+   ++ +Le+lL kPv R+t+  L L++llkhtp++h+d+  L
     aj01345   642 SNKDAKdP-TtKNSLETLLYKPVDRVTRSTLVLHDLLKHTPASHPDHPLL 690  

                   kkAleaikelasqvNe<-*
                   ++Al+++++++s++Ne   
     aj01345   691 QDALRISQNFLSSINE    706  

SM00233: domain 1 of 1, from 725 to 884: score 43.2, E = 3.5e-08
                   *->vikeGwLlkksk.swkkryfvLfngvLlyyksk..........kpkg
                      ++k  ++  +  + +k r+++Lf++ Ll++k k+++++++++ ++k 
     aj01345   725    LLKDSFMVELVEgARKLRHVFLFTDLLLCTKLKkqsggktqqyDCKW 771  

                   sipLsgcsvre.p.....................................
                    ipL+++s+++ ++ +  ++ +  ++++ +  + + +  +++  ++++ +
     aj01345   772 YIPLTDLSFQMvDeleavpniplvpdeeldalkikisqiksdiqrekran 821  

                   ...........................cFeivt.dr.tlllqAeseeere
                   ++++  ++ +++ ++ ++     +++ +F++++++++++++  +s+ er 
     aj01345   822 kgskaterlkkklseqesllllmspsmAFRVHSrNGkSYTFLISSDYERA 871  

                   eWvealqsaiaka<-*
                   eW e +++ ++k+   
     aj01345   872 EWRENIREQQKKC    884  

SM00239: domain 1 of 1, from 928 to 1033: score 55.0, E = 9.9e-12
                   *->tLtvkiisArnLp...DPYVkvs...........kTkvvkktlsgfN
                       L+v ++sA + + +++ Y++++ ++ +   ++ kT+v ++t     
     aj01345   928    FLNVIVHSATGFKqssNLYCTLEvdsfgyfvnkaKTRVYRDTA---E 971  

                   PvWnEesetFeFevpp.s.LeieVyDk................dfiGrvt
                   P WnE   +Fe+e+  +++L+i +y+k  ++++ ++++++++++++G+ +
     aj01345   972 PNWNE---EFEIELEGsQtLRILCYEKcynktkipkedgestdRLMGKGQ 1018 

                   ippnnahqhsadglihlsell.ggrh.kl<-*
                   +               l+    ++r+ +    
     aj01345  1019 VQ--------------LDPQAlQDRDwQR    1033 

SM00324: domain 1 of 1, from 1081 to 1265: score 248.3, E = 6.1e-70
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      s +P iv++C+e++e+rG++++GIYRvsG+++ +++L++afd ++++
     aj01345  1081    SKVPYIVRQCVEEIERRGMEEVGIYRVSGVATDIQALKAAFDVNNKd 1127 

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                   +           s++ +e dv+++Ag LKly+ReLPePL+t+e y++f e
     aj01345  1128 V-----------SVMMSEMDVNAIAGTLKLYFRELPEPLFTDEFYPNFAE 1166 

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                    + l              +d++++  ++++ll +LP+an+ t+ +Ll+HL
     aj01345  1167 GIAL--------------SDPVAKESCMLNLLLSLPEANLLTFLFLLdHL 1202 

                   nrVaehsevNkMtarNLAivFgPtLlrpp...............ltdikh
                   +rVae+++vNkM+++NLA+vFgPtLlrp++++++ + +++++ ++td+  
     aj01345  1203 KRVAEKEAVNKMSLHNLATVFGPTLLRPSekesklpanpsqpitMTDSWS 1252 

                   qnkvvetlienad<-*
                     ++ ++++  ++   
     aj01345  1253 LEVMSQVQVLLYF    1265 

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