hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-02440063/chunk_1/iprscan-20080807-02440063.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ak00083 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00955.11.ls HCO3- transporter family 1198.6 0 1 PF00955.11.fs HCO3- transporter family 1196.9 0 1 PF07565.4.fs Band 3 cytoplasmic domain 438.7 7.4e-129 1 PF07565.4.ls Band 3 cytoplasmic domain 367.5 2e-107 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07565.4.ls 1/1 249 539 .. 1 286 [] 367.5 2e-107 PF07565.4.fs 1/1 336 539 .. 67 286 .] 438.7 7.4e-129 PF00955.11.fs 1/1 594 1081 .. 1 519 [] 1196.9 0 PF00955.11.ls 1/1 594 1081 .. 1 519 [] 1198.6 0 Alignments of top-scoring domains: PF07565.4.ls: domain 1 of 1, from 249 to 539: score 367.5, E = 2e-107 *->dveeggerWGKPHVAtLSfhSLlELRrciakGavL...........L + ge+ ++P ++ S+ LR + G +L+++++++++ + ak00083 249 ASRLAGEK-SRPWSPSASY----DLRERLCPGSALgnpggpeqqvpT 290 DLqatSLpgvahlVvdql...ilsg.......qlraedRe.......eVL D ++ g a+ +d +++++l+++++ +++ + R ++++++++VL ak00083 291 DEAEAQMLGSAD--LDDMkshRLEDnpgvrrhLVKKPSRTqggrgspSVL 338 RALLlKHsHqsekkdlnGaGGekGGflprarsqasiGkklshhh.aqsas R+LLlKHsH++++kd++ f+pr++s++s++++l++hh+++s++ ak00083 339 RTLLLKHSHPNDDKDSG--------FFPRNPSSSSMNSVLGNHHpTPSHG 380 kdeevpegpvtsgtpllpqeserdlemqtlhevgqsGvnCdissrdksKl +d++vp++++++g+p++++++++d+++++lh++g++ ++r+ks ak00083 381 PDGAVPTMADDLGEPAPLWPHDPDAKEKPLHMPGGD------GHRGKS-- 422 elkllkKiPedaEAsnVLVGevDFLErPivAFVRLqeAveLegvlEVPVP lkll+KiPedaEA++VLVG+v+FLE+P++AFVRL+eAv+Le+vlEVPVP ak00083 423 -LKLLEKIPEDAEATVVLVGCVPFLEQPAAAFVRLNEAVLLESVLEVPVP 471 vRFLFvLLGPsgkgqdYHEiGRaiATLMsDevFhddAYlAkeReDLLagI vRFLFv+LGPs++++dYHE+GR+iATLMsD++Fh++AY+A++R+DLL++I ak00083 472 VRFLFVMLGPSHTSTDYHELGRSIATLMSDKLFHEAAYQADDRQDLLSAI 521 deFLDcsiVLPPgEvdpe<-* +eFLD+siV+PP+Ev+++ ak00083 522 SEFLDGSIVIPPSEVEGR 539 PF07565.4.fs: domain 1 of 1, from 336 to 539: score 438.7, E = 7.4e-129 *->eVLRALLlKHsHqsekkdlnGaGGekGGflprarsqasiGkklshhh +VLR+LLlKHsH++++kd++ f+pr++s++s++++l++hh ak00083 336 SVLRTLLLKHSHPNDDKDSG--------FFPRNPSSSSMNSVLGNHH 374 .aqsaskdeevpegpvtsgtpllpqeserdlemqtlhevgqsGvnCdiss +++s+++d++vp++++++g+p++++++++d+++++lh++g++ ++ ak00083 375 pTPSHGPDGAVPTMADDLGEPAPLWPHDPDAKEKPLHMPGGD------GH 418 rdksKlelkllkKiPedaEAsnVLVGevDFLErPivAFVRLqeAveLegv r+ks lkll+KiPedaEA++VLVG+v+FLE+P++AFVRL+eAv+Le+v ak00083 419 RGKS---LKLLEKIPEDAEATVVLVGCVPFLEQPAAAFVRLNEAVLLESV 465 lEVPVPvRFLFvLLGPsgkgqdYHEiGRaiATLMsDevFhddAYlAkeRe lEVPVPvRFLFv+LGPs++++dYHE+GR+iATLMsD++Fh++AY+A++R+ ak00083 466 LEVPVPVRFLFVMLGPSHTSTDYHELGRSIATLMSDKLFHEAAYQADDRQ 515 DLLagIdeFLDcsiVLPPgEvdpe<-* DLL++I+eFLD+siV+PP+Ev+++ ak00083 516 DLLSAISEFLDGSIVIPPSEVEGR 539 PF00955.11.fs: domain 1 of 1, from 594 to 1081: score 1196.9, E = 0 *->pLeRTGRlFGGLIrDiKRryPwYlSDfrDALnpQcLAAiiFiYFAaL pL RTG +FGGL+rD++RryP+Y+SD rDAL+ Qc+AA++FiYFAaL ak00083 594 PLLRTGSVFGGLVRDVRRRYPHYPSDLRDALHSQCVAAVLFIYFAAL 640 SPAITFGGLLGekTeglmGvsEsllStAvqGivFsLlagQPLlIlGsTGP SPAITFGGLLGekTeglmGvsE+++StAv G++FsLl++QPLl++G++GP ak00083 641 SPAITFGGLLGEKTEGLMGVSELIVSTAVLGVLFSLLGAQPLLVVGFSGP 690 lLVFEealFkFCkdngldYLtfRvWIGlWlavivLvlVAtEgSfLVryiT lLVFEea+FkFC+ ++l+YLt+RvW+GlWl+v+vL+lVA EgSfLVryi+ ak00083 691 LLVFEEAFFKFCRAQDLEYLTGRVWVGLWLVVFVLALVAAEGSFLVRYIS 740 RFTqEiFaaLISlIFIYEtfkKLikifkahPlnssykldfltnysCvcvp +FTqEiFa+LISlIFIYEtf+KL+k+f++hPl+ y p ak00083 741 PFTQEIFAFLISLIFIYETFYKLYKVFTEHPLLPFY-------------P 777 Petvnseslaeskkltkttteidwslltksecekyggsldgtscgth.pp Pe++ s + +e +g+ l +t++++ +++ ak00083 778 PEGALEGS-------------------LAAGLEPNGSALPPTEGPPSpRN 808 qPntaLlSliLmfGTFfiAyfLKkFKNSrFFPgkvRrvIgDFgVpIaIli qPntaLlSliLm+GTFfiA+fL+kF+NSrF++gk+Rr+IgDFg+pI+Il+ ak00083 809 QPNTALLSLILMLGTFFIAFFLRKFRNSRFLGGKARRIIGDFGIPISILV 858 MvlvDyligdvyTqKLsVPsglkPTnptkRGWfInPlgkkggnPwWmmfa MvlvDy+i d+yTqKL+VP+gl++T+p+kR+WfI+Plg+++++P Wmm+a ak00083 859 MVLVDYSITDTYTQKLTVPTGLSVTSPDKRSWFIPPLGSARPFPPWMMVA 908 AaiPALLvtILIFMeqQITalIVnkKErkLkKGsGfHLDLLlvavlggvC Aa+PALLv+ILIFMe+QITalIV++K r+L KGsGfHLDLLl+++lgg+C ak00083 909 AAVPALLVLILIFMETQITALIVSQKARRLLKGSGFHLDLLLIGSLGGLC 958 slfGLPWlvAATVrSitHvnsLtveSkcsAPGekPqilgVrEQRVTGllV +lfGLPWl+AATVrS+tHvn+Ltv+ ++APG+kPqi++VrEQRVTG+l+ ak00083 959 GLFGLPWLTAATVRSVTHVNALTVMRTAIAPGDKPQIQEVREQRVTGVLI 1008 flLvGlSVlmapiLkfIPMpVLFGvFLYMGVaSLsGIQlfdRllLllMPa + LvGlS++m+++L++IP++VLFG+FLYMGV+SLsGIQl +RllL+lMPa ak00083 1009 ASLVGLSIVMGAVLRRIPLAVLFGIFLYMGVTSLSGIQLSQRLLLILMPA 1058 KyqPDviYvRhVptwRvHLFTli<-* K++P+++Yv++V+twR+HLFT+i ak00083 1059 KHHPEQPYVTKVKTWRMHLFTCI 1081 PF00955.11.ls: domain 1 of 1, from 594 to 1081: score 1198.6, E = 0 *->pLeRTGRlFGGLIrDiKRryPwYlSDfrDALnpQcLAAiiFiYFAaL pL RTG +FGGL+rD++RryP+Y+SD rDAL+ Qc+AA++FiYFAaL ak00083 594 PLLRTGSVFGGLVRDVRRRYPHYPSDLRDALHSQCVAAVLFIYFAAL 640 SPAITFGGLLGekTeglmGvsEsllStAvqGivFsLlagQPLlIlGsTGP SPAITFGGLLGekTeglmGvsE+++StAv G++FsLl++QPLl++G++GP ak00083 641 SPAITFGGLLGEKTEGLMGVSELIVSTAVLGVLFSLLGAQPLLVVGFSGP 690 lLVFEealFkFCkdngldYLtfRvWIGlWlavivLvlVAtEgSfLVryiT lLVFEea+FkFC+ ++l+YLt+RvW+GlWl+v+vL+lVA EgSfLVryi+ ak00083 691 LLVFEEAFFKFCRAQDLEYLTGRVWVGLWLVVFVLALVAAEGSFLVRYIS 740 RFTqEiFaaLISlIFIYEtfkKLikifkahPlnssykldfltnysCvcvp +FTqEiFa+LISlIFIYEtf+KL+k+f++hPl+ y p ak00083 741 PFTQEIFAFLISLIFIYETFYKLYKVFTEHPLLPFY-------------P 777 Petvnseslaeskkltkttteidwslltksecekyggsldgtscgth.pp Pe++ s + +e +g+ l +t++++ +++ ak00083 778 PEGALEGS-------------------LAAGLEPNGSALPPTEGPPSpRN 808 qPntaLlSliLmfGTFfiAyfLKkFKNSrFFPgkvRrvIgDFgVpIaIli qPntaLlSliLm+GTFfiA+fL+kF+NSrF++gk+Rr+IgDFg+pI+Il+ ak00083 809 QPNTALLSLILMLGTFFIAFFLRKFRNSRFLGGKARRIIGDFGIPISILV 858 MvlvDyligdvyTqKLsVPsglkPTnptkRGWfInPlgkkggnPwWmmfa MvlvDy+i d+yTqKL+VP+gl++T+p+kR+WfI+Plg+++++P Wmm+a ak00083 859 MVLVDYSITDTYTQKLTVPTGLSVTSPDKRSWFIPPLGSARPFPPWMMVA 908 AaiPALLvtILIFMeqQITalIVnkKErkLkKGsGfHLDLLlvavlggvC Aa+PALLv+ILIFMe+QITalIV++K r+L KGsGfHLDLLl+++lgg+C ak00083 909 AAVPALLVLILIFMETQITALIVSQKARRLLKGSGFHLDLLLIGSLGGLC 958 slfGLPWlvAATVrSitHvnsLtveSkcsAPGekPqilgVrEQRVTGllV +lfGLPWl+AATVrS+tHvn+Ltv+ ++APG+kPqi++VrEQRVTG+l+ ak00083 959 GLFGLPWLTAATVRSVTHVNALTVMRTAIAPGDKPQIQEVREQRVTGVLI 1008 flLvGlSVlmapiLkfIPMpVLFGvFLYMGVaSLsGIQlfdRllLllMPa + LvGlS++m+++L++IP++VLFG+FLYMGV+SLsGIQl +RllL+lMPa ak00083 1009 ASLVGLSIVMGAVLRRIPLAVLFGIFLYMGVTSLSGIQLSQRLLLILMPA 1058 KyqPDviYvRhVptwRvHLFTli<-* K++P+++Yv++V+twR+HLFT+i ak00083 1059 KHHPEQPYVTKVKTWRMHLFTCI 1081 //