hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-03015705/chunk_1/iprscan-20080807-03015705.nocrc
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Query sequence: ak00172
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF06665.2.fs Protein of unknown function (DUF1172)          249.1    8.3e-72   1
PF06665.2.ls Protein of unknown function (DUF1172)          222.8    6.9e-64   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06665.2.fs   1/1       1   108 [.    26   133 .]   249.1  8.3e-72
PF06665.2.ls   1/1       1   108 [.     1   133 []   222.8  6.9e-64

Alignments of top-scoring domains:
PF06665.2.fs: domain 1 of 1, from 1 to 108: score 249.1, E = 8.3e-72
                   *->atlieqigvrchpklyeegdpdekveLveGfnvyiprsqLenihlsa
                      a+li+qig+rchpkly+egdp+ek+eLv+G+nvyi+r+qL+n+h+sa
     ak00172     1    AELINQIGNRCHPKLYDEGDPSEKLELVTGTNVYITRAQLMNCHVSA 47   

                   grkhslllRkLLatfFDrnTLAnscgtGkRsstfddqrKPLDsrvLdAvK
                   g++h++llR+LLa+fFDrnTLAnscgtG+Rsst+d++rKPLDsrvL+AvK
     ak00172    48 GTRHKVLLRRLLASFFDRNTLANSCGTGIRSSTNDPRRKPLDSRVLHAVK 97   

                   vycqnFApafk<-*
                   +ycqnFAp+fk   
     ak00172    98 YYCQNFAPNFK    108  

PF06665.2.ls: domain 1 of 1, from 1 to 108: score 222.8, E = 6.9e-64
                   *->KpepvelesrsaviarrdikLqAlpatlieqigvrchpklyeegdpd
                                               a+li+qig+rchpkly+egdp+
     ak00172     1    -------------------------AELINQIGNRCHPKLYDEGDPS 22   

                   ekveLveGfnvyiprsqLenihlsagrkhslllRkLLatfFDrnTLAnsc
                   ek+eLv+G+nvyi+r+qL+n+h+sag++h++llR+LLa+fFDrnTLAnsc
     ak00172    23 EKLELVTGTNVYITRAQLMNCHVSAGTRHKVLLRRLLASFFDRNTLANSC 72   

                   gtGkRsstfddqrKPLDsrvLdAvKvycqnFApafk<-*
                   gtG+Rsst+d++rKPLDsrvL+AvK+ycqnFAp+fk   
     ak00172    73 GTGIRSSTNDPRRKPLDSRVLHAVKYYCQNFAPNFK    108  

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