hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-17443597/chunk_1/iprscan-20090618-17443597.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bf00036 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00454.17.ls Phosphatidylinositol 3- and 4-kinase 364.1 2e-106 1 PF00454.17.fs Phosphatidylinositol 3- and 4-kinase 362.4 6.7e-106 1 PF02259.13.fs FAT domain 281.1 4.6e-94 1 PF02259.13.ls FAT domain 282.6 6.9e-82 1 PF08064.3.fs UME (NUC010) domain 185.9 2.4e-54 2 PF08064.3.ls UME (NUC010) domain 186.6 5.4e-53 1 PF02260.10.fs FATC domain 68.3 7.2e-19 1 PF02260.10.ls FATC domain 70.3 5.6e-18 1 PF02985.12.fs HEAT repeat 42.9 4.8e-11 4 PF02985.12.ls HEAT repeat 45.8 1.3e-10 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02985.12.ls 1/4 806 842 .. 1 36 [] 20.9 0.0041 PF08064.3.ls 1/1 1126 1232 .. 1 115 [] 186.6 5.4e-53 PF08064.3.fs 1/2 1126 1232 .. 1 115 [] 184.8 5.2e-54 PF02985.12.ls 4/4 1336 1372 .. 1 36 [] 19.7 0.01 PF02259.13.fs 1/1 1778 2101 .. 1 547 [] 281.1 4.6e-94 PF02259.13.ls 1/1 1778 2101 .. 1 547 [] 282.6 6.9e-82 PF00454.17.fs 1/1 2328 2574 .. 1 329 [] 362.4 6.7e-106 PF00454.17.ls 1/1 2328 2574 .. 1 329 [] 364.1 2e-106 PF02260.10.ls 1/1 2619 2651 .] 1 33 [] 70.3 5.6e-18 PF02260.10.fs 1/1 2619 2651 .] 1 33 [] 68.3 7.2e-19 Alignments of top-scoring domains: PF02985.12.ls: domain 1 of 4, from 806 to 842: score 20.9, E = 0.0041 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* e+ ++ +l +ll+l++Dpd +VR a + ++e l bf00036 806 EtDVKAVLGTLLNLMEDPDKDVRVAFSGNIKHILESL 842 PF08064.3.ls: domain 1 of 1, from 1126 to 1232: score 186.6, E = 5.4e-53 *->fanfLqehiLGIlqvFssdlhdidgkteifeKkraLngIgfLiklag +a++Lq+++LGIl++F+++l+++++ +i++Kk+aLn++++L+kl+g bf00036 1126 MADYLQPKLLGILAFFNMQLLSSSV--GIEDKKMALNSLMSLMKLMG 1170 gkhissalpqisacLfqtaLeipedLaLqenalrcWhvLvrkLADvneee +kh+ss++++++++L +t+L++++d ++e+++r+W+++vr+L ++++ bf00036 1171 PKHVSSVRVKMMTTL-RTGLRFKDD--FPELCCRAWDCFVRCL---DHAC 1214 Lgslldqiiaillplwet<-* Lgsll+++i++llpl+++ bf00036 1215 LGSLLSHVIVALLPLIHI 1232 PF08064.3.fs: domain 1 of 2, from 1126 to 1232: score 184.8, E = 5.2e-54 *->fanfLqehiLGIlqvFssdlhdidgkteifeKkraLngIgfLiklag +a++Lq+++LGIl++F+++l+++++ +i++Kk+aLn++++L+kl+g bf00036 1126 MADYLQPKLLGILAFFNMQLLSSSV--GIEDKKMALNSLMSLMKLMG 1170 gkhissalpqisacLfqtaLeipedLaLqenalrcWhvLvrkLADvneee +kh+ss++++++++L +t+L++++d ++e+++r+W+++vr+L ++++ bf00036 1171 PKHVSSVRVKMMTTL-RTGLRFKDD--FPELCCRAWDCFVRCL---DHAC 1214 Lgslldqiiaillplwet<-* Lgsll+++i++llpl+++ bf00036 1215 LGSLLSHVIVALLPLIHI 1232 PF02985.12.ls: domain 4 of 4, from 1336 to 1372: score 19.7, E = 0.01 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* e+i+++l+ +llk+++D ++ R+ + e+Lg+l + bf00036 1336 EpIISQLVTVLLKGCQDANSQARLLCGECLGELGAID 1372 PF02259.13.fs: domain 1 of 1, from 1778 to 2101: score 281.1, E = 4.6e-94 *->aplaleAAWrlgqWddqdlmeeylsamklkLLLqGedqSLLtfiddt +++ +eAAW l+qW dl+e+yl a bf00036 1778 NTYRVEAAWKLSQW---DLVENYLAADG------------------- 1802 pdkeFfkAiLalhksqelsfliilqdlllalkkgeekefdealkyidiyr ks +++++l++lll++kk++ +f++ lk+++ bf00036 1803 -------------KST--TWSVRLGQLLLSAKKRDITAFYDSLKLVR--- 1834 eardlldtelsalpgkeSynraYdvlvrlQmLaELeEAsIyaLsTniiny a +++ + ++ + Sy+r+Y ++vrl+mL+ELe+ +i + bf00036 1835 -AEQIVPLSAASFER-GSYQRGYEYIVRLHMLCELEH--------SIKPL 1874 kskpgelaslaelrLvmkrllktWrrRLpgvkqddvevWqdiLavRrval ++++ ++s+ + ++W +RL+++ q +++ +++iLa+Rr+ l bf00036 1875 FQHSPGDSSQ--------EDSLNWVARLEMT-QNSYRAKEPILALRRALL 1915 slieeklktqsgvtamvderspSqhaplrdpansrlfsIkelLqkSlsdl sl bf00036 1916 SL------------------------------------------------ 1917 nrslvlgpheda..etwlkfArlcRnaeagvseIqleksgLWdkrlslAe +++++ +++ +e+wl++Ar++R k+g ++++A+ bf00036 1918 ---NKRPDYNEMvgECWLQSARVAR------------KAG----HHQTAY 1948 kaLlkllgldnslpedplprlspsvvyaylKllwqegchrqainelqnyl +aLl++ ++ ++ +++K+lw++g+ +qa ++lq + bf00036 1949 NALLNAGESRL-----------AELYVERAKWLWSKGDVHQALIVLQKGV 1987 eVkaltnlqyftselsaelftlkgkfleqlg.lkeeqlqkeenaytaeqi e l + + t + ++ + +g +++++g+++ee+ ++e+na bf00036 1988 E---LCFPENETPPEGKNM-LIHGRAMLLVGrFMEETANFESNA------ 2027 hlgatysimanalLlARCyLklGeWqkalrqdswnesidgilqsyaeAte i+++y++ t+ bf00036 2028 ----------------------------------------IMKKYKDVTA 2037 ldpkwykaWhtwAlhnfEvvsileqeeqQlakiqeasdsaldaqmtsvts ++p+w+++++++A+++++++++++++++ bf00036 2038 CLPEWEDGHFYLAKYYDKLMPMVTDNKM---------------------- 2065 kdqqsekldesasqseseliseyavpAvegylrSlslgskeslqdtlRLL ++++d +++++v +++rSl++g++ ++q+++R+L bf00036 2066 ----EKQGD-------------LIRYIVLHFGRSLQYGNQFIYQSMPRML 2098 tLW<-* tLW bf00036 2099 TLW 2101 PF02259.13.ls: domain 1 of 1, from 1778 to 2101: score 282.6, E = 6.9e-82 *->aplaleAAWrlgqWddqdlmeeylsamklkLLLqGedqSLLtfiddt +++ +eAAW l+qW dl+e+yl a bf00036 1778 NTYRVEAAWKLSQW---DLVENYLAADG------------------- 1802 pdkeFfkAiLalhksqelsfliilqdlllalkkgeekefdealkyidiyr ks +++++l++lll++kk++ +f++ lk+++ bf00036 1803 -------------KST--TWSVRLGQLLLSAKKRDITAFYDSLKLVR--- 1834 eardlldtelsalpgkeSynraYdvlvrlQmLaELeEAsIyaLsTniiny a +++ + ++ + Sy+r+Y ++vrl+mL+ELe+ +i + bf00036 1835 -AEQIVPLSAASFER-GSYQRGYEYIVRLHMLCELEH--------SIKPL 1874 kskpgelaslaelrLvmkrllktWrrRLpgvkqddvevWqdiLavRrval ++++ ++s+ + ++W +RL+++ q +++ +++iLa+Rr+ l bf00036 1875 FQHSPGDSSQ--------EDSLNWVARLEMT-QNSYRAKEPILALRRALL 1915 slieeklktqsgvtamvderspSqhaplrdpansrlfsIkelLqkSlsdl sl bf00036 1916 SL------------------------------------------------ 1917 nrslvlgpheda..etwlkfArlcRnaeagvseIqleksgLWdkrlslAe +++++ +++ +e+wl++Ar++R k+g ++++A+ bf00036 1918 ---NKRPDYNEMvgECWLQSARVAR------------KAG----HHQTAY 1948 kaLlkllgldnslpedplprlspsvvyaylKllwqegchrqainelqnyl +aLl++ ++ ++ +++K+lw++g+ +qa ++lq + bf00036 1949 NALLNAGESRL-----------AELYVERAKWLWSKGDVHQALIVLQKGV 1987 eVkaltnlqyftselsaelftlkgkfleqlg.lkeeqlqkeenaytaeqi e l + + t + ++ + +g +++++g+++ee+ ++e+na bf00036 1988 E---LCFPENETPPEGKNM-LIHGRAMLLVGrFMEETANFESNA------ 2027 hlgatysimanalLlARCyLklGeWqkalrqdswnesidgilqsyaeAte i+++y++ t+ bf00036 2028 ----------------------------------------IMKKYKDVTA 2037 ldpkwykaWhtwAlhnfEvvsileqeeqQlakiqeasdsaldaqmtsvts ++p+w+++++++A+++++++++++++++ bf00036 2038 CLPEWEDGHFYLAKYYDKLMPMVTDNKM---------------------- 2065 kdqqsekldesasqseseliseyavpAvegylrSlslgskeslqdtlRLL ++++d +++++v +++rSl++g++ ++q+++R+L bf00036 2066 ----EKQGD-------------LIRYIVLHFGRSLQYGNQFIYQSMPRML 2098 tLW<-* tLW bf00036 2099 TLW 2101 PF00454.17.fs: domain 1 of 1, from 2328 to 2574: score 362.4, E = 6.7e-106 *->gypfifKgGdDLrsrQDelvlQligVfKPkDEEPyApnNPkgtkvsq y +++K +dDLr +D++ +++ bf00036 2328 FYIMMCKPKDDLR--KDCRLMEFN----------------------- 2349 GerlmnkllkgegldrrRnlqltaYlviplgpgsGlIEwvpnsttlaeil +l nk+l++++++rrR+l++++Y vipl++++G+IEwv+n+ +l++il bf00036 2350 --SLINKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPIL 2397 rtymvkkaikdfnksrffkdkkttkkleknakllkehkllqmvldrkqlt + +++k+ + k +l++++ +k+++ bf00036 2398 TKLYKEKGVYMTGK------------------------ELRQCMLPKSAA 2423 llekvevFeeklsntpkpgllqwFvkknpdaapyeewfeRfardnfvrSc l ek++vF+e+l+++++p++++wF+ +pd+ w + +r+ ++rS bf00036 2424 LSEKLKVFREFLLPRHPPIFHEWFLRTFPDP---TSWYS--SRSAYCRST 2468 AgmsvldYiLGigDRHldNiLvkkndkktGklfHIDFGlcfghvkgkrgp A+ms+++YiLG+gDRH++NiL+ d tG+++H+DF++ f+ kg++++ bf00036 2469 AVMSMVGYILGLGDRHGENILF---DSLTGECVHVDFNCLFN--KGETFE 2513 kpervPFrLTrWPQaklpmveamggyiasLgpsgdeglFrelceeayral +pe vPFrLT+ +mv++m gp+g+eglFr+ ce ++r++ bf00036 2514 VPEIVPFRLTH------NMVNGM-------GPMGTEGLFRRACEVTMRLM 2550 RrnanlllnlLkkkAvarGelmledglpdwrs<-* R + + l+++L ++l+d+l++w++ bf00036 2551 RDQREPLMSVL--------KTFLHDPLVEWSK 2574 PF00454.17.ls: domain 1 of 1, from 2328 to 2574: score 364.1, E = 2e-106 *->gypfifKgGdDLrsrQDelvlQligVfKPkDEEPyApnNPkgtkvsq y +++K +dDLr +D++ +++ bf00036 2328 FYIMMCKPKDDLR--KDCRLMEFN----------------------- 2349 GerlmnkllkgegldrrRnlqltaYlviplgpgsGlIEwvpnsttlaeil +l nk+l++++++rrR+l++++Y vipl++++G+IEwv+n+ +l++il bf00036 2350 --SLINKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPIL 2397 rtymvkkaikdfnksrffkdkkttkkleknakllkehkllqmvldrkqlt + +++k+ + k +l++++ +k+++ bf00036 2398 TKLYKEKGVYMTGK------------------------ELRQCMLPKSAA 2423 llekvevFeeklsntpkpgllqwFvkknpdaapyeewfeRfardnfvrSc l ek++vF+e+l+++++p++++wF+ +pd+ w + +r+ ++rS bf00036 2424 LSEKLKVFREFLLPRHPPIFHEWFLRTFPDP---TSWYS--SRSAYCRST 2468 AgmsvldYiLGigDRHldNiLvkkndkktGklfHIDFGlcfghvkgkrgp A+ms+++YiLG+gDRH++NiL+ d tG+++H+DF++ f+ kg++++ bf00036 2469 AVMSMVGYILGLGDRHGENILF---DSLTGECVHVDFNCLFN--KGETFE 2513 kpervPFrLTrWPQaklpmveamggyiasLgpsgdeglFrelceeayral +pe vPFrLT+ +mv++m gp+g+eglFr+ ce ++r++ bf00036 2514 VPEIVPFRLTH------NMVNGM-------GPMGTEGLFRRACEVTMRLM 2550 RrnanlllnlLkkkAvarGelmledglpdwrs<-* R + + l+++L ++l+d+l++w++ bf00036 2551 RDQREPLMSVL--------KTFLHDPLVEWSK 2574 PF02260.10.ls: domain 1 of 1, from 2619 to 2651: score 70.3, E = 5.6e-18 *->epLsvegqvedLIqqATspenLsqmYiGWcPfl<-* +pLs+eg+v++LIq+AT+++ L+qmY+GW+P++ bf00036 2619 LPLSIEGHVHYLIQEATDENLLCQMYLGWTPYM 2651 PF02260.10.fs: domain 1 of 1, from 2619 to 2651: score 68.3, E = 7.2e-19 *->epLsvegqvedLIqqATspenLsqmYiGWcPfl<-* +pLs+eg+v++LIq+AT+++ L+qmY+GW+P++ bf00036 2619 LPLSIEGHVHYLIQEATDENLLCQMYLGWTPYM 2651 //