hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-03073154/chunk_1/iprscan-20080807-03073154.nocrc
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Query sequence: bf00778
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  80.3    2.4e-19   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/5     209   253 ..     1    46 []     8.2       25
SM00320    2/5     259   304 ..     1    46 []     0.9  3.5e+02
SM00320    3/5     307   347 ..     1    46 []    40.5  2.3e-07
SM00320    4/5     350   392 ..     1    46 []    26.9   0.0028
SM00320    5/5     423   460 ..     1    46 []     3.8  1.2e+02

Alignments of top-scoring domains:
SM00320: domain 1 of 5, from 209 to 253: score 8.2, E = 25
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      + k++ +lk+ H++  p  +v+f+ ++++ ++p ++a+ ++++ + l
     bf00778   209    SfKCVNSLKeDHNQ--PLFGVQFNWHSKE-GDPLVFATVGsNR-VTL 251  

                   Wd<-*
                   ++   
     bf00778   252 YE    253  

SM00320: domain 2 of 5, from 259 to 304: score 0.9, E = 3.5e+02
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                      + +ll+++ +   +     +++a+  d+++  s  lla++++ g ir
     bf00778   259    EiRLLQSYVdaDADE--NFYTCAWTYDSNT--SHPLLAVAGsRGIIR 301  

                   lWd<-*
                   + +   
     bf00778   302 IIN    304  

SM00320: domain 3 of 5, from 307 to 347: score 40.5, E = 2.3e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t ++++ + gH +  +++ ++f+p +     pnll+s s+D+ +rlW
     bf00778   307    TmQCIKHYVGHGN--AINELKFHPRD-----PNLLLSVSkDHALRLW 346  

                   d<-*
                   +   
     bf00778   347 N    347  

SM00320: domain 4 of 5, from 350 to 392: score 26.9, E = 0.0028
                   *->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti
                      t++l++++ + +gH++  +V+s +++  g      + + s++ D+++
     bf00778   350    TdTLVAIFGgveGHRD--EVLSADYDLLG------EKIMSCGmDHSL 388  

                   rlWd<-*
                   +lW    
     bf00778   389 KLWR    392  

SM00320: domain 5 of 5, from 423 to 460: score 3.8, E = 1.2e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                           +t + H++  +V +v++  d        l++s s  + i +W
     bf00778   423    HfPDFSTRDIHRN--YVDCVRWLGD--------LILSKScENAIVCW 459  

                   d<-*
                   +   
     bf00778   460 K    460  

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