hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-16060054/chunk_1/iprscan-20090630-16060054.nocrc
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Query sequence: bg00015s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00098.13.fs Zinc knuckle                                    28.2    1.1e-06   1
PF00098.13.ls Zinc knuckle                                    30.2    6.6e-06   1
PF00536.20.fs SAM domain (Sterile alpha motif)                19.9    3.2e-05   1
PF00536.20.ls SAM domain (Sterile alpha motif)                21.8     0.0013   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00536.20.fs   1/1     390   451 ..     1    65 []    19.9  3.2e-05
PF00536.20.ls   1/1     390   451 ..     1    65 []    21.8   0.0013
PF00098.13.fs   1/1    1002  1019 ..     1    18 []    28.2  1.1e-06
PF00098.13.ls   1/1    1002  1019 ..     1    18 []    30.2  6.6e-06

Alignments of top-scoring domains:
PF00536.20.fs: domain 1 of 1, from 390 to 451: score 19.9, E = 3.2e-05
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
                      +    + + +WL++++l++Y   F  +++ +++++l lteeDL +  
   bg00015s1   390    QTQEQNGILDWLRKLRLHKYYPVF--KQL-SMEKFLSLTEEDLNKFE 433  

                   vtllGHrkKIlssIqgLk<-*
                      +G  kK+   ++  k   
   bg00015s1   434 SLTMGAKKKLKTQLELEK    451  

PF00536.20.ls: domain 1 of 1, from 390 to 451: score 21.8, E = 0.0013
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
                      +    + + +WL++++l++Y   F  +++ +++++l lteeDL +  
   bg00015s1   390    QTQEQNGILDWLRKLRLHKYYPVF--KQL-SMEKFLSLTEEDLNKFE 433  

                   vtllGHrkKIlssIqgLk<-*
                      +G  kK+   ++  k   
   bg00015s1   434 SLTMGAKKKLKTQLELEK    451  

PF00098.13.fs: domain 1 of 1, from 1002 to 1019: score 28.2, E = 1.1e-06
                   *->rkCynCGkpGHiardCpk<-*
                        CynCG +GH+a dC++   
   bg00015s1  1002    LSCYNCGATGHRAQDCKQ    1019 

PF00098.13.ls: domain 1 of 1, from 1002 to 1019: score 30.2, E = 6.6e-06
                   *->rkCynCGkpGHiardCpk<-*
                        CynCG +GH+a dC++   
   bg00015s1  1002    LSCYNCGATGHRAQDCKQ    1019 

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