hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-16060054/chunk_1/iprscan-20090630-16060054.nocrc
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Query sequence: bg00015s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00343                                                  29.7     0.0004   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00343      1/1    1003  1019 ..     1    17 []    29.7   0.0004

Alignments of top-scoring domains:
SM00343: domain 1 of 1, from 1003 to 1019: score 29.7, E = 0.0004
                   *->kCynCGkeGHiardCpk<-*
                       CynCG +GH+a dC++   
   bg00015s1  1003    SCYNCGATGHRAQDCKQ    1019 

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