hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-03454795/chunk_1/iprscan-20080807-03454795.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bg00122 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00955.11.fs HCO3- transporter family 804.5 5.6e-239 1 PF00955.11.ls HCO3- transporter family 639.6 2.4e-189 1 PF07565.4.ls Band 3 cytoplasmic domain 449.6 3.9e-132 1 PF07565.4.fs Band 3 cytoplasmic domain 447.7 1.4e-131 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07565.4.fs 1/1 54 321 .. 1 286 [] 447.7 1.4e-131 PF07565.4.ls 1/1 54 321 .. 1 286 [] 449.6 3.9e-132 PF00955.11.fs 1/1 400 778 .. 1 377 [. 804.5 5.6e-239 PF00955.11.ls 1/1 400 816 .. 1 519 [] 639.6 2.4e-189 Alignments of top-scoring domains: PF07565.4.fs: domain 1 of 1, from 54 to 321: score 447.7, E = 1.4e-131 *->dveeggerWGKPHVAtLSfhSLlELRrciakGavLLDLqatSLpgva +veeggerW+KPHV+tLS+hSL+ELR+c+ +G+vLLDL+ SLp++ bg00122 54 KVEEGGERWSKPHVSTLSLHSLFELRTCLQTGTVLLDLDSGSLPQII 100 hlVvdqlilsgqlraedReeVLRALLlKHsHqsekkdlnGaGGekGGflp + V++ +i+ g lr+e Re V LL++H+Hq + p bg00122 101 DDVIEKQIEDGLLRPELRERVSYVLLRRHRHQ----TKK----------P 136 rarsqasiGkklshhhaqsaskdeevpegpvtsgtpllpqeserdlemqt + rs+a+iGk++s + s+ + + gp ++ + ++ + ++ bg00122 137 IHRSLADIGKSVST---TNRSPARSPGAGPSLYHSTEDLRMRQSANYGRL 183 lhevgqsGvnCdissrdksKlelkllkKiPedaEAsnVLVGevDFLErPi h ++ s +n ++ + + ++k++kKiP d+EAsnVLVGevDFL++P+ bg00122 184 CHAQSRS-MNDISLTPNTDQRKNKFMKKIPKDSEASNVLVGEVDFLDQPF 232 vAFVRLqeAveLegvlEVPVPvRFLFvLLGPsgkgqdYHEiGRaiATLMs +AFVRL ++++L+gv+EVPVP+RFLF+LLGPsg +++Y EiGRaiATLM bg00122 233 IAFVRLIQSAMLGGVTEVPVPTRFLFILLGPSGRAKSYNEIGRAIATLMV 282 DevFhddAYlAkeReDLLagIdeFLDcsiVLPPgEvdpe<-* D +F+d+AY+A++ReDL+agIdeFLD++iVLPPgE+dp+ bg00122 283 DDLFSDVAYKARNREDLIAGIDEFLDEVIVLPPGEWDPN 321 PF07565.4.ls: domain 1 of 1, from 54 to 321: score 449.6, E = 3.9e-132 *->dveeggerWGKPHVAtLSfhSLlELRrciakGavLLDLqatSLpgva +veeggerW+KPHV+tLS+hSL+ELR+c+ +G+vLLDL+ SLp++ bg00122 54 KVEEGGERWSKPHVSTLSLHSLFELRTCLQTGTVLLDLDSGSLPQII 100 hlVvdqlilsgqlraedReeVLRALLlKHsHqsekkdlnGaGGekGGflp + V++ +i+ g lr+e Re V LL++H+Hq + p bg00122 101 DDVIEKQIEDGLLRPELRERVSYVLLRRHRHQ----TKK----------P 136 rarsqasiGkklshhhaqsaskdeevpegpvtsgtpllpqeserdlemqt + rs+a+iGk++s + s+ + + gp ++ + ++ + ++ bg00122 137 IHRSLADIGKSVST---TNRSPARSPGAGPSLYHSTEDLRMRQSANYGRL 183 lhevgqsGvnCdissrdksKlelkllkKiPedaEAsnVLVGevDFLErPi h ++ s +n ++ + + ++k++kKiP d+EAsnVLVGevDFL++P+ bg00122 184 CHAQSRS-MNDISLTPNTDQRKNKFMKKIPKDSEASNVLVGEVDFLDQPF 232 vAFVRLqeAveLegvlEVPVPvRFLFvLLGPsgkgqdYHEiGRaiATLMs +AFVRL ++++L+gv+EVPVP+RFLF+LLGPsg +++Y EiGRaiATLM bg00122 233 IAFVRLIQSAMLGGVTEVPVPTRFLFILLGPSGRAKSYNEIGRAIATLMV 282 DevFhddAYlAkeReDLLagIdeFLDcsiVLPPgEvdpe<-* D +F+d+AY+A++ReDL+agIdeFLD++iVLPPgE+dp+ bg00122 283 DDLFSDVAYKARNREDLIAGIDEFLDEVIVLPPGEWDPN 321 PF00955.11.fs: domain 1 of 1, from 400 to 778: score 804.5, E = 5.6e-239 *->pLeRTGRlFGGLIrDiKRryPwYlSDfrDALnpQcLAAiiFiYFAaL +L +TGR+FGGL++DiKR+ Pw++SDf+D++++Q+++Ai+FiY++++ bg00122 400 ELIWTGRFFGGLCLDIKRKLPWFPSDFYDGFHIQSISAILFIYLGCI 446 SPAITFGGLLGekTeglmGvsEsllStAvqGivFsLlagQPLlIlGsTGP ++AITFGGLLG++T++++Gv+Es+l+tA++G +F+L++gQPL+Il+sTGP bg00122 447 TNAITFGGLLGDATDNYQGVMESFLGTAMAGSLFCLFSGQPLIILSSTGP 496 lLVFEealFkFCkdngldYLtfRvWIGlWlavivLvlVAtEgSfLVryiT +L+FE++lF+F+k ngldY++fR+WIGl +av++L+lVAt++Sf+++yiT bg00122 497 ILIFEKLLFDFSKGNGLDYMEFRLWIGLHSAVQCLILVATDASFIIKYIT 546 RFTqEiFaaLISlIFIYEtfkKLikifkahPlnssykldfltnysCvcvp RFT+E+F++LIS+IFIY+++kK+i fk++P+n+++k++f+t+y+C+cv+ bg00122 547 RFTEEGFSTLISFIFIYDAIKKMIGAFKYYPINMDFKPNFITTYKCECVA 596 Petvnseslaeskkltktt..........teidwslltksecekyggsld P+tvn++++++s++l ++t+ + + + t++dwsll+k+ec++ygg+l bg00122 597 PDTVNTTVFNASAPLAPDTnaslynllnlTALDWSLLSKKECLSYGGRLL 646 gtscgthppqPntaLlSliLmfGTFfiAyfLKkFKNSrFFPgkvRrvIgD g+sc +++P+ aL+S+iL+fGT++++++LKkFK+Sr+FP+kvR++++D bg00122 647 GNSC---KFIPDLALMSFILFFGTYSMTLTLKKFKFSRYFPTKVRALVAD 693 FgVpIaIliMvlvDyligdvyTqKLsVPsglkPTnptkRGWfInPlgkkg F+++++Il+++++D+++g ++T+KL+VPs++kPT+p+ RGWf+ P+ g bg00122 694 FSIVFSILMFCGIDACFG-LETPKLHVPSVIKPTRPD-RGWFVAPF---G 738 gnPwWmmfaAaiPALLvtILIFMeqQITalIVnkKErkLk<-* +nPwW+++a+++PALLvtILIFM+qQITa+IVn+KE+kLk bg00122 739 KNPWWVYPASILPALLVTILIFMDQQITAVIVNRKENKLK 778 PF00955.11.ls: domain 1 of 1, from 400 to 816: score 639.6, E = 2.4e-189 *->pLeRTGRlFGGLIrDiKRryPwYlSDfrDALnpQcLAAiiFiYFAaL +L +TGR+FGGL++DiKR+ Pw++SDf+D++++Q+++Ai+FiY++++ bg00122 400 ELIWTGRFFGGLCLDIKRKLPWFPSDFYDGFHIQSISAILFIYLGCI 446 SPAITFGGLLGekTeglmGvsEsllStAvqGivFsLlagQPLlIlGsTGP ++AITFGGLLG++T++++Gv+Es+l+tA++G +F+L++gQPL+Il+sTGP bg00122 447 TNAITFGGLLGDATDNYQGVMESFLGTAMAGSLFCLFSGQPLIILSSTGP 496 lLVFEealFkFCkdngldYLtfRvWIGlWlavivLvlVAtEgSfLVryiT +L+FE++lF+F+k ngldY++fR+WIGl +av++L+lVAt++Sf+++yiT bg00122 497 ILIFEKLLFDFSKGNGLDYMEFRLWIGLHSAVQCLILVATDASFIIKYIT 546 RFTqEiFaaLISlIFIYEtfkKLikifkahPlnssykldfltnysCvcvp RFT+E+F++LIS+IFIY+++kK+i fk++P+n+++k++f+t+y+C+cv+ bg00122 547 RFTEEGFSTLISFIFIYDAIKKMIGAFKYYPINMDFKPNFITTYKCECVA 596 Petvnseslaeskkltktt..........teidwslltksecekyggsld P+tvn++++++s++l ++t+ + + + t++dwsll+k+ec++ygg+l bg00122 597 PDTVNTTVFNASAPLAPDTnaslynllnlTALDWSLLSKKECLSYGGRLL 646 gtscgthppqPntaLlSliLmfGTFfiAyfLKkFKNSrFFPgkvRrvIgD g+sc +++P+ aL+S+iL+fGT++++++LKkFK+Sr+FP+kvR++++D bg00122 647 GNSC---KFIPDLALMSFILFFGTYSMTLTLKKFKFSRYFPTKVRALVAD 693 FgVpIaIliMvlvDyligdvyTqKLsVPsglkPTnptkRGWfInPlgkkg F+++++Il+++++D+++g ++T+KL+VPs++kPT+p+ RGWf+ P+ g bg00122 694 FSIVFSILMFCGIDACFG-LETPKLHVPSVIKPTRPD-RGWFVAPF---G 738 gnPwWmmfaAaiPALLvtILIFMeqQITalIVnkKErkLkKGsGfHLDLL +nPwW+++a+++PALLvtILIFM+qQITa+IVn+KE+kL KG bg00122 739 KNPWWVYPASILPALLVTILIFMDQQITAVIVNRKENKL-KGT------- 780 lvavlggvCslfGLPWlvAATVrSitHvnsLtveSkcsAPGekPqilgVr S H L ++ + PG P+ bg00122 781 ----------------------ESNRHHR-LHPDGNLCLPGSHPKV---- 803 EQRVTGllVflLvGlSVlmapiLkfIPMpVLFGvFLYMGVaSLsGIQlfd bg00122 - -------------------------------------------------- - RllLllMPaKyqPDviYvRhVptwRvHLFTli<-* +P vR p+ bg00122 804 -----------YPPAGAVRSLPLH-------- 816 //