# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obg00175.fasta.nr -Q bg00175.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bg00175, 155 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6814940 sequences Expectation_n fit: rho(ln(x))= 5.2992+/-0.000181; mu= 5.6285+/- 0.010 mean_var=67.7302+/-13.214, 0's: 38 Z-trim: 101 B-trim: 3 in 1/67 Lambda= 0.155842 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089092|dbj|BAD92990.1| Hypothetical protein F ( 155) 1016 236.5 1e-60 gi|114640403|ref|XP_508767.2| PREDICTED: hypotheti ( 149) 973 226.9 8e-58 gi|109108731|ref|XP_001087792.1| PREDICTED: RNA bi ( 149) 962 224.4 4.5e-57 gi|119587652|gb|EAW67248.1| RNA binding motif prot ( 267) 961 224.3 8.4e-57 gi|114640401|ref|XP_001151010.1| PREDICTED: hypoth ( 267) 961 224.3 8.4e-57 gi|7023641|dbj|BAA92036.1| unnamed protein product ( 267) 953 222.5 2.9e-56 gi|109108729|ref|XP_001088040.1| PREDICTED: RNA bi ( 267) 950 221.8 4.7e-56 gi|9978697|sp|Q9Y580|RBM7_HUMAN RNA-binding protei ( 266) 944 220.5 1.2e-55 gi|47682782|gb|AAH70262.1| RNA binding motif prote ( 266) 941 219.8 1.9e-55 gi|55732787|emb|CAH93091.1| hypothetical protein [ ( 264) 922 215.5 3.6e-54 gi|149716524|ref|XP_001502226.1| PREDICTED: simila ( 266) 906 211.9 4.4e-53 gi|73955122|ref|XP_853905.1| PREDICTED: similar to ( 268) 872 204.3 8.9e-51 gi|91207337|sp|Q3MHY8|RBM7_BOVIN RNA-binding prote ( 262) 863 202.3 3.6e-50 gi|32493337|gb|AAH54774.1| RNA binding motif prote ( 265) 846 198.5 5.1e-49 gi|55976586|sp|Q9CQT2|RBM7_MOUSE RNA-binding prote ( 265) 846 198.5 5.1e-49 gi|149041583|gb|EDL95424.1| RNA binding motif prot ( 265) 834 195.8 3.3e-48 gi|73988847|ref|XP_854307.1| PREDICTED: similar to ( 251) 832 195.3 4.3e-48 gi|126326634|ref|XP_001371053.1| PREDICTED: simila ( 276) 797 187.4 1.1e-45 gi|126326636|ref|XP_001371080.1| PREDICTED: simila ( 270) 780 183.6 1.5e-44 gi|149578821|ref|XP_001507009.1| PREDICTED: hypoth ( 273) 735 173.5 1.7e-41 gi|148693757|gb|EDL25704.1| mCG9666, isoform CRA_a ( 116) 707 167.0 6.6e-40 gi|148693759|gb|EDL25706.1| mCG9666, isoform CRA_c ( 155) 660 156.5 1.3e-36 gi|148693758|gb|EDL25705.1| mCG9666, isoform CRA_b ( 238) 656 155.7 3.4e-36 gi|89269044|emb|CAJ83792.1| RNA binding motif prot ( 249) 655 155.5 4.1e-36 gi|32766620|gb|AAH54991.1| Rbm7-prov protein [Xeno ( 251) 638 151.7 5.8e-35 gi|53130199|emb|CAG31450.1| hypothetical protein [ ( 279) 627 149.2 3.5e-34 gi|41351458|gb|AAH65641.1| Zgc:77304 protein [Dani ( 252) 528 126.9 1.6e-27 gi|29436971|gb|AAH49507.1| Zgc:77304 [Danio rerio] ( 252) 522 125.6 4.1e-27 gi|148680697|gb|EDL12644.1| mCG1036215 [Mus muscul ( 128) 480 116.0 1.7e-24 gi|118083744|ref|XP_416676.2| PREDICTED: hypotheti ( 115) 434 105.6 2e-21 gi|74152027|dbj|BAE32049.1| unnamed protein produc ( 199) 432 105.3 4.2e-21 gi|149041582|gb|EDL95423.1| RNA binding motif prot ( 199) 420 102.6 2.7e-20 gi|47210698|emb|CAF96067.1| unnamed protein produc ( 223) 419 102.4 3.5e-20 gi|187469189|gb|AAI66987.1| Rbm7 protein [Rattus n ( 199) 416 101.7 5.1e-20 gi|74267635|gb|AAI02761.1| RNA binding motif prote ( 246) 406 99.5 2.9e-19 gi|109065778|ref|XP_001083260.1| PREDICTED: RNA bi ( 281) 406 99.5 3.2e-19 gi|119877641|ref|XP_001252566.1| PREDICTED: hypoth ( 335) 406 99.6 3.7e-19 gi|149059696|gb|EDM10579.1| RNA binding motif prot ( 144) 399 97.8 5.5e-19 gi|149059695|gb|EDM10578.1| RNA binding motif prot ( 176) 399 97.9 6.5e-19 gi|29747748|gb|AAH50779.1| Rbm11 protein [Mus musc ( 238) 399 97.9 8.4e-19 gi|148665852|gb|EDK98268.1| RNA binding motif prot ( 254) 399 97.9 8.8e-19 gi|26333183|dbj|BAC30309.1| unnamed protein produc ( 237) 397 97.5 1.1e-18 gi|114683624|ref|XP_531391.2| PREDICTED: RNA bindi ( 281) 396 97.3 1.5e-18 gi|9978670|sp|P57052|RBM11_HUMAN Putative RNA-bind ( 281) 396 97.3 1.5e-18 gi|57108733|ref|XP_535558.1| PREDICTED: similar to ( 238) 390 95.9 3.4e-18 gi|46249522|gb|AAH68729.1| MGC81187 protein [Xenop ( 246) 375 92.5 3.6e-17 gi|115966286|ref|XP_001198112.1| PREDICTED: simila ( 353) 371 91.7 9.1e-17 gi|134025425|gb|AAI35424.1| LOC100124814 protein [ ( 243) 364 90.1 2e-16 gi|49257848|gb|AAH74235.1| MGC83967 protein [Xenop ( 255) 359 89.0 4.5e-16 gi|185177638|pdb|2YWK|A Chain A, Crystal Structure ( 95) 353 87.4 5.1e-16 >>gi|62089092|dbj|BAD92990.1| Hypothetical protein FLJ11 (155 aa) initn: 1016 init1: 1016 opt: 1016 Z-score: 1245.2 bits: 236.5 E(): 1e-60 Smith-Waterman score: 1016; 100.000% identity (100.000% similar) in 155 aa overlap (1-155:1-155) 10 20 30 40 50 60 bg0017 GGGDAEMGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GGGDAEMGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF 10 20 30 40 50 60 70 80 90 100 110 120 bg0017 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP 70 80 90 100 110 120 130 140 150 bg0017 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVVG ::::::::::::::::::::::::::::::::::: gi|620 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVVG 130 140 150 >>gi|114640403|ref|XP_508767.2| PREDICTED: hypothetical (149 aa) initn: 973 init1: 973 opt: 973 Z-score: 1193.2 bits: 226.9 E(): 8e-58 Smith-Waterman score: 973; 100.000% identity (100.000% similar) in 149 aa overlap (7-155:1-149) 10 20 30 40 50 60 bg0017 GGGDAEMGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF 10 20 30 40 50 70 80 90 100 110 120 bg0017 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP 60 70 80 90 100 110 130 140 150 bg0017 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVVG ::::::::::::::::::::::::::::::::::: gi|114 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVVG 120 130 140 >>gi|109108731|ref|XP_001087792.1| PREDICTED: RNA bindin (149 aa) initn: 962 init1: 962 opt: 962 Z-score: 1179.9 bits: 224.4 E(): 4.5e-57 Smith-Waterman score: 962; 99.329% identity (99.329% similar) in 149 aa overlap (7-155:1-149) 10 20 30 40 50 60 bg0017 GGGDAEMGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF 10 20 30 40 50 70 80 90 100 110 120 bg0017 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: gi|109 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHASQDVSLSYPQHHVGNSSPTSTSP 60 70 80 90 100 110 130 140 150 bg0017 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVVG ::::::::::::::::::::::::::::::::::: gi|109 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVVG 120 130 140 >>gi|119587652|gb|EAW67248.1| RNA binding motif protein (267 aa) initn: 961 init1: 961 opt: 961 Z-score: 1174.9 bits: 224.3 E(): 8.4e-57 Smith-Waterman score: 961; 99.324% identity (100.000% similar) in 148 aa overlap (7-154:1-148) 10 20 30 40 50 60 bg0017 GGGDAEMGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF 10 20 30 40 50 70 80 90 100 110 120 bg0017 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP 60 70 80 90 100 110 130 140 150 bg0017 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVVG :::::::::::::::::::::::::::::::::. gi|119 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPS 120 130 140 150 160 170 gi|119 VQSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRD 180 190 200 210 220 230 >>gi|114640401|ref|XP_001151010.1| PREDICTED: hypothetic (267 aa) initn: 961 init1: 961 opt: 961 Z-score: 1174.9 bits: 224.3 E(): 8.4e-57 Smith-Waterman score: 961; 99.324% identity (100.000% similar) in 148 aa overlap (7-154:1-148) 10 20 30 40 50 60 bg0017 GGGDAEMGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF 10 20 30 40 50 70 80 90 100 110 120 bg0017 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP 60 70 80 90 100 110 130 140 150 bg0017 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVVG :::::::::::::::::::::::::::::::::. gi|114 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPS 120 130 140 150 160 170 gi|114 VQSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRD 180 190 200 210 220 230 >>gi|7023641|dbj|BAA92036.1| unnamed protein product [Ho (267 aa) initn: 953 init1: 953 opt: 953 Z-score: 1165.2 bits: 222.5 E(): 2.9e-56 Smith-Waterman score: 953; 98.649% identity (100.000% similar) in 148 aa overlap (7-154:1-148) 10 20 30 40 50 60 bg0017 GGGDAEMGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|702 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF 10 20 30 40 50 70 80 90 100 110 120 bg0017 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|702 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQYHVGNSSPTSTSP 60 70 80 90 100 110 130 140 150 bg0017 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVVG :::::::::::::::::::::::::::::::::. gi|702 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPS 120 130 140 150 160 170 gi|702 VQSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRD 180 190 200 210 220 230 >>gi|109108729|ref|XP_001088040.1| PREDICTED: RNA bindin (267 aa) initn: 950 init1: 950 opt: 950 Z-score: 1161.5 bits: 221.8 E(): 4.7e-56 Smith-Waterman score: 950; 98.649% identity (99.324% similar) in 148 aa overlap (7-154:1-148) 10 20 30 40 50 60 bg0017 GGGDAEMGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF 10 20 30 40 50 70 80 90 100 110 120 bg0017 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: gi|109 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHASQDVSLSYPQHHVGNSSPTSTSP 60 70 80 90 100 110 130 140 150 bg0017 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVVG :::::::::::::::::::::::::::::::::. gi|109 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVMNSTLRQMSYGGKFGSPPLDQSGFSPS 120 130 140 150 160 170 gi|109 VQSHSHSFNQSSSSQWRQDTPSSQRKVRMNSHPYLADRHYSREQRYTDHGSDHHYRGNRD 180 190 200 210 220 230 >>gi|9978697|sp|Q9Y580|RBM7_HUMAN RNA-binding protein 7 (266 aa) initn: 947 init1: 757 opt: 944 Z-score: 1154.3 bits: 220.5 E(): 1.2e-55 Smith-Waterman score: 944; 98.649% identity (99.324% similar) in 148 aa overlap (7-154:1-147) 10 20 30 40 50 60 bg0017 GGGDAEMGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|997 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF 10 20 30 40 50 70 80 90 100 110 120 bg0017 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|997 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP 60 70 80 90 100 110 130 140 150 bg0017 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVVG : :::::::::::::::::::::::::::::::. gi|997 S-RYERTMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPS 120 130 140 150 160 170 gi|997 VQSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRD 180 190 200 210 220 230 >>gi|47682782|gb|AAH70262.1| RNA binding motif protein 7 (266 aa) initn: 944 init1: 754 opt: 941 Z-score: 1150.6 bits: 219.8 E(): 1.9e-55 Smith-Waterman score: 941; 97.973% identity (99.324% similar) in 148 aa overlap (7-154:1-147) 10 20 30 40 50 60 bg0017 GGGDAEMGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF 10 20 30 40 50 70 80 90 100 110 120 bg0017 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|476 VNFKHEVSVPYAMNLLNGIRLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP 60 70 80 90 100 110 130 140 150 bg0017 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVVG : :::::::::::::::::::::::::::::::. gi|476 S-RYERTMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPS 120 130 140 150 160 170 gi|476 VQSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRD 180 190 200 210 220 230 >>gi|55732787|emb|CAH93091.1| hypothetical protein [Pong (264 aa) initn: 922 init1: 922 opt: 922 Z-score: 1127.6 bits: 215.5 E(): 3.6e-54 Smith-Waterman score: 922; 97.931% identity (98.621% similar) in 145 aa overlap (10-154:1-145) 10 20 30 40 50 60 bg0017 GGGDAEMGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 AAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAF 10 20 30 40 50 70 80 90 100 110 120 bg0017 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: gi|557 VNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHASQDVSLSYPQHHVGNSSPTSTSP 60 70 80 90 100 110 130 140 150 bg0017 SSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVVG ::::::::::::::: :::::::::::::::::. gi|557 SSRYERTMDNMTSSAPIIQRSFSSPENFQRQAVMNSALRQMSYSGKFGSSPLDQSGFSPS 120 130 140 150 160 170 gi|557 VQSHSHSFNQSSSSQWRHGTPSSQRKVRMNSHPYLADRHYSREQRYTDHGSDHHYRGKRD 180 190 200 210 220 230 155 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 17:36:52 2008 done: Fri Aug 8 17:39:55 2008 Total Scan time: 571.890 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]