hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-17395680/chunk_1/iprscan-20080808-17395680.nocrc
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Query sequence: bg00175
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     84.4    6.6e-23   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     86.3    8.5e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1      18    88 ..     1    74 []    84.4  6.6e-23
PF00076.12.ls   1/1      18    88 ..     1    74 []    86.3  8.5e-23

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 18 to 88: score 84.4, E = 6.6e-23
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVgNL + +tee L++lF + Gp++ +ki++D     g++k faFV
     bg00175    18    LFVGNLETKVTEELLFELFHQAGPVIKVKIPKD---KDGKPKQFAFV 61   

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F+ e ++  A+  lnG++l gr++++   
     bg00175    62 NFKHEVSVPYAMNLLNGIKLYGRPIKI    88   

PF00076.12.ls: domain 1 of 1, from 18 to 88: score 86.3, E = 8.5e-23
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVgNL + +tee L++lF + Gp++ +ki++D     g++k faFV
     bg00175    18    LFVGNLETKVTEELLFELFHQAGPVIKVKIPKD---KDGKPKQFAFV 61   

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F+ e ++  A+  lnG++l gr++++   
     bg00175    62 NFKHEVSVPYAMNLLNGIKLYGRPIKI    88   

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