hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20100329/iprscan-20100329-17454742/chunk_1/iprscan-20100329-17454742.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bg00212
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00069.15.ls Protein kinase domain                       350.4   2.7e-102   1
PF00069.15.fs Protein kinase domain                       348.4   1.1e-101   1
PF07714.7.fs Protein tyrosine kinase                      33.4    1.3e-09   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00069.15.fs   1/1      62   346 ..     1   287 []   348.4 1.1e-101
PF07714.7.fs   1/1      62   118 ..     1    70 [.    33.4  1.3e-09
PF00069.15.ls   1/1      62   346 ..     1   287 []   350.4 2.7e-102

Alignments of top-scoring domains:
PF00069.15.fs: domain 1 of 1, from 62 to 346: score 348.4, E = 1.1e-101
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      y+  +++G GsfG+Vy+ak  ++g++VA+K++  +k+ ++       
     bg00212    62    YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR------ 102  

                   lsEiqilkrLsHpNIvrlidvfed....kdhly..lVlEycegGL.rvld
                     E+qi+++L+H+NIvrl+++f++++++kd++y +lVl+y++ ++ rv+ 
     bg00212   103 --ELQIMRKLDHCNIVRLRYFFYSsgekKDEVYlnLVLDYVPETVyRVAR 150  

                   LfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNI
                    +     +r+k +l  +   +k +++Q++r l+Y+Hs gi+HRD+KP+N+
     bg00212   151 HY-----SRAKQTL--PVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 193  

                   LldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggn
                   Lld +  v   lK++DFG+Ak+  + +++++ ++ ++++Y+APE++ g++
     bg00212   194 LLDPDTAV---LKLCDFGSAKQ--LvRGEpNVSYICSRYYRAPELIFGAT 238  

                   gygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplef
                   +y++++DvWS+G++l+ell+G+p+F+g+   s++dql+ i k+lg+p+++
     bg00212   239 DYTSSIDVWSAGCVLAELLLGQPIFPGD---SgVDQLVEIIKVLGTPTRE 285  

                   dspewdsisrse.fr........r.l.pnlseeakdLikkcLnkDPskRl
                    + e ++++++++f++ + ++ ++ ++p++++ea+ L++++L++ P+ Rl
     bg00212   286 QIREMNPNYTEFkFPqikahpwtKvFrPRTPPEAIALCSRLLEYTPTARL 335  

                   taeeilqHPwf<-*
                   t+ e++ H +f   
     bg00212   336 TPLEACAHSFF    346  

PF07714.7.fs: domain 1 of 1, from 62 to 118: score 33.4, E = 1.3e-09
                   *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie
                       +  k++G G+FG+Vy+++l     + +  VA+K++ + +   ++  
     bg00212    62    YTDTKVIGNGSFGVVYQAKLC----DSGELVAIKKVLQ-DKRFKN-- 101  

                   redFlrEAsiMkklGdHpNiVrL<-*
                        rE++iM+kl dH NiVrL   
     bg00212   102 -----RELQIMRKL-DHCNIVRL    118  

PF00069.15.ls: domain 1 of 1, from 62 to 346: score 350.4, E = 2.7e-102
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      y+  +++G GsfG+Vy+ak  ++g++VA+K++  +k+ ++       
     bg00212    62    YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR------ 102  

                   lsEiqilkrLsHpNIvrlidvfed....kdhly..lVlEycegGL.rvld
                     E+qi+++L+H+NIvrl+++f++++++kd++y +lVl+y++ ++ rv+ 
     bg00212   103 --ELQIMRKLDHCNIVRLRYFFYSsgekKDEVYlnLVLDYVPETVyRVAR 150  

                   LfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNI
                    +     +r+k +l  +   +k +++Q++r l+Y+Hs gi+HRD+KP+N+
     bg00212   151 HY-----SRAKQTL--PVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 193  

                   LldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggn
                   Lld +  v   lK++DFG+Ak+  + +++++ ++ ++++Y+APE++ g++
     bg00212   194 LLDPDTAV---LKLCDFGSAKQ--LvRGEpNVSYICSRYYRAPELIFGAT 238  

                   gygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplef
                   +y++++DvWS+G++l+ell+G+p+F+g+   s++dql+ i k+lg+p+++
     bg00212   239 DYTSSIDVWSAGCVLAELLLGQPIFPGD---SgVDQLVEIIKVLGTPTRE 285  

                   dspewdsisrse.fr........r.l.pnlseeakdLikkcLnkDPskRl
                    + e ++++++++f++ + ++ ++ ++p++++ea+ L++++L++ P+ Rl
     bg00212   286 QIREMNPNYTEFkFPqikahpwtKvFrPRTPPEAIALCSRLLEYTPTARL 335  

                   taeeilqHPwf<-*
                   t+ e++ H +f   
     bg00212   336 TPLEACAHSFF    346  

//