hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20100329/iprscan-20100329-17454742/chunk_1/iprscan-20100329-17454742.nocrc
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Query sequence: bg00212
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 302.9    2.3e-86   1
SM00219                                                  -9.5    1.5e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      62   346 ..     1   280 []    -9.5  1.5e-10
SM00220    1/1      62   346 ..     1   231 []   302.9  2.3e-86

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 62 to 346: score -9.5, E = 1.5e-10
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda..keeFlrEak
                       t  k++G+G FG+Vy+++l ++++ VA+K++  d++ k    rE++
     bg00212    62    YTDTKVIGNGSFGVVYQAKLCdsgELVAIKKVLQDKrfKN---RELQ 105  

                   iMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLrk
                   iM+kl  +H NiV+L     ++g++    + +++ +        ldy  +
     bg00212   106 IMRKL--DHCNIVRLRYFFYSSGEKK---DEVYLNL-------VLDYVPE 143  

                   nrpk...........lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNc
                   +  +  ++ ++ +++l++     +++Q  +  +Y++s ++ HRD+   N 
     bg00212   144 TVYRvarhysrakqtLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNL 193  

                   Lvgenk.vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWm
                   L++ +  v K +DFG ++ l  +    e    Y      +++        
     bg00212   194 LLDPDTaVLKLCDFGSAKQLVRG----EPNVSYI-----CSR-----YYR 229  

                   APEsl..kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqq..fmsnee
                   APE + + +  +ts  DVWS G +L E++ lG++  pg    +++    e
     bg00212   230 APELIfgATD-YTSSIDVWSAGCVLAELL-LGQPIFPG---DsgVDQLVE 274  

                   vleylkkGyRlpkPendlpiS...................s.vtCPdelY
                   +++ l +  R  + e      ++ ++ + ++ + ++ ++ ++++ P+e  
     bg00212   275 IIKVLGTPTREQIREM----NpnytefkfpqikahpwtkvFrPRTPPEAI 320  

                   dlMlqCWaedPedRPtFsel..verl<-*
                    l ++  ++ P  R t  e   ++++   
     bg00212   321 ALCSRLLEYTPTARLTPLEAcaHSFF    346  

SM00220: domain 1 of 1, from 62 to 346: score 302.9, E = 2.3e-86
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik...erilrEikiLk
                      Y+  k++G G+FG+Vy+a+  ++g+lvAiK++ ++++   rE++i++
     bg00212    62    YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLqdkRFKNRELQIMR 108  

                   k.dHPNIVkLydvfed.......dklylVmEyceGdlGdLfdllkkrgrr
                   k dH NIV+L ++f+++++++++ +l lV++y++    +++++ +++ r 
     bg00212   109 KlDHCNIVRLRYFFYSsgekkdeVYLNLVLDYVPE---TVYRVARHYSRA 155  

                   glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds...hvK
                   +  + l+   ++ y++Q+++ L+Y+Hs gI+HRD+KP+N+LLd ++ ++K
     bg00212   156 K--QTLPViYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPdtaVLK 203  

                   laDFGlArql......ttfvGTpeYmAPEvl....gYgkpavDiWSlGci
                   l+DFG+A+ql +++++ +++ +++Y+APE++ + + Y+  ++D+WS Gc+
     bg00212   204 LCDFGSAKQLvrgepnVSYICSRYYRAPELIfgatDYTS-SIDVWSAGCV 252  

                   lyElltGkpPFp......qldlifkkig......................
                   l+Ell G+p Fp++++ +ql +i+k++g+++++  ++ ++++++ + +  
     bg00212   253 LAELLLGQPIFPgdsgvdQLVEIIKVLGtptreqiremnpnytefkfpqi 302  

                   .............SpeakdLikklLvkdPekRlta.eaLedeldikaHPf
                   + +++++  +++++pea+ L ++lL++ P+ Rlt  ea +       H f
     bg00212   303 kahpwtkvfrprtPPEAIALCSRLLEYTPTARLTPlEACA-------HSF 345  

                   f<-*
                   f   
     bg00212   346 F    346  

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