hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-04043962/chunk_1/iprscan-20080807-04043962.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bg00217 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00435.11.fs Spectrin repeat 124.9 1.2e-36 7 PF00435.11.ls Spectrin repeat 124.8 2.3e-34 5 PF00621.11.fs RhoGEF domain 116.0 4.2e-34 1 PF00621.11.ls RhoGEF domain 117.8 2.9e-32 1 PF00169.19.fs PH domain 46.4 1.2e-13 1 PF00169.19.ls PH domain 48.4 2.2e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00435.11.ls 1/5 192 312 .. 1 111 [] 14.9 0.0024 PF00435.11.ls 2/5 314 420 .. 1 111 [] 30.3 6.2e-06 PF00435.11.fs 3/7 314 420 .. 1 111 [] 28.4 6.3e-08 PF00435.11.ls 3/5 540 646 .. 1 111 [] 23.3 0.00051 PF00435.11.fs 4/7 540 646 .. 1 111 [] 21.3 7.9e-06 PF00435.11.fs 6/7 894 999 .. 1 111 [] 23.5 1.8e-06 PF00435.11.ls 4/5 894 999 .. 1 111 [] 25.4 0.00018 PF00435.11.ls 5/5 1125 1231 .. 1 111 [] 30.8 4.4e-06 PF00435.11.fs 7/7 1125 1217 .. 1 97 [. 28.7 5.1e-08 PF00621.11.ls 1/1 1280 1450 .. 1 207 [] 117.8 2.9e-32 PF00621.11.fs 1/1 1280 1450 .. 1 207 [] 116.0 4.2e-34 PF00169.19.fs 1/1 1470 1575 .. 1 92 [] 46.4 1.2e-13 PF00169.19.ls 1/1 1470 1575 .. 1 92 [] 48.4 2.2e-11 Alignments of top-scoring domains: PF00435.11.ls: domain 1 of 5, from 192 to 312: score 14.9, E = 0.0024 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk l l++F++ a +l+s +e+ ++L+ ++ + d+e+ + L + H bg00217 192 LSLEEFFNSAVHLLSRLEDLQEMLARKEF-PVDVEGSRRLID--EHT 235 aleaelaahqdrvealninelaekLiideghyas................ +l++ +++ ve+l+ ++++L + + ++++ +++ + ++ bg00217 236 QLKK--KVLKAPVEELD--REGQRLLQCIRCSDGfsgrncipgsadfqsl 281 .eeiqerleeLnerWeqLlelaaeRkqkLee<-* + i++ l+ L++ +++L++++ Rk kL + bg00217 282 vPKITSLLDKLHSTRQHLHQMWHVRKLKLDQ 312 PF00435.11.ls: domain 2 of 5, from 314 to 420: score 30.3, E = 6.2e-06 *->lllqqFqrdaddlesWieek.ealL.ssedyegkdleevqaLlkqlk +l++F +da+ + Wi+ +e +L+s +++ g +++ + L+ + bg00217 314 FQLRLFEQDAEKMFDWISHNkELFLqSHTEI-GVSYQYALDLQT--Q 357 HkaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerW H + + +++ + +a +L ++ghyas++i++ +L++ W bg00217 358 HNHFAMNSMNAYVNINRIM--SVASRL-SEAGHYASQQIKQISTQLDQEW 404 eqLlelaaeRkqkLee<-* ++ ++++eR L bg00217 405 KSFAAALDERSTILAM 420 PF00435.11.fs: domain 3 of 7, from 314 to 420: score 28.4, E = 6.3e-08 *->lllqqFqrdaddlesWieek.ealL.ssedyegkdleevqaLlkqlk +l++F +da+ + Wi+ +e +L+s +++ g +++ + L+ + bg00217 314 FQLRLFEQDAEKMFDWISHNkELFLqSHTEI-GVSYQYALDLQT--Q 357 HkaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerW H + + +++ + +a +L ++ghyas++i++ +L++ W bg00217 358 HNHFAMNSMNAYVNINRIM--SVASRL-SEAGHYASQQIKQISTQLDQEW 404 eqLlelaaeRkqkLee<-* ++ ++++eR L bg00217 405 KSFAAALDERSTILAM 420 PF00435.11.ls: domain 3 of 5, from 540 to 646: score 23.3, E = 0.00051 *->lllqqFqrdaddlesWieek.ealL.ssedyegkdleevqaLlkqlk l+l Fq+d+++++ Wie +ea+L+ + + gk+l ++aL+k + bg00217 540 LQLCVFQQDVQQVLDWIENHgEAFLsKHTGV-GKSLHRARALQK--R 583 HkaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerW H+++e+ ++ ++ ++l e ae+L ++ g ++eei + +L+ r bg00217 584 HDDFEEVAQNTYTNADKLL--EAAEQL-AQTGECDPEEIYKAARHLEVRI 630 eqLlelaaeRkqkLee<-* ++ +++++Rk L bg00217 631 QDFVRRVEQRKLLLDM 646 PF00435.11.fs: domain 4 of 7, from 540 to 646: score 21.3, E = 7.9e-06 *->lllqqFqrdaddlesWieek.ealL.ssedyegkdleevqaLlkqlk l+l Fq+d+++++ Wie +ea+L+ + + gk+l ++aL+k + bg00217 540 LQLCVFQQDVQQVLDWIENHgEAFLsKHTGV-GKSLHRARALQK--R 583 HkaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerW H+++e+ ++ ++ ++l e ae+L ++ g ++eei + +L+ r bg00217 584 HDDFEEVAQNTYTNADKLL--EAAEQL-AQTGECDPEEIYKAARHLEVRI 630 eqLlelaaeRkqkLee<-* ++ +++++Rk L bg00217 631 QDFVRRVEQRKLLLDM 646 PF00435.11.fs: domain 6 of 7, from 894 to 999: score 23.5, E = 1.8e-06 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk l+l+ +q ++++++ Wi+ e +L++ + + +l+e+++L++ H+ bg00217 894 LQLRHLQAEVKQVLGWIRNGESMLNASLVNASSLSEAEQLQR--EHE 938 aleaelaa.hqdrvealninelaekLiideghyaseeiqerleeLnerWe +++ ++ +hq + +++ + ae L +++ghy++++i+e e + +W+ bg00217 939 QFQLAIEKtHQSAL-QVQ--QKAEVL-LQAGHYDADAIRECAEKVALHWQ 984 qLlelaaeRkqkLee<-* qL +++R + + bg00217 985 QLMLKMEDRLKLVNA 999 PF00435.11.ls: domain 4 of 5, from 894 to 999: score 25.4, E = 0.00018 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk l+l+ +q ++++++ Wi+ e +L++ + + +l+e+++L++ H+ bg00217 894 LQLRHLQAEVKQVLGWIRNGESMLNASLVNASSLSEAEQLQR--EHE 938 aleaelaa.hqdrvealninelaekLiideghyaseeiqerleeLnerWe +++ ++ +hq + +++ + ae L +++ghy++++i+e e + +W+ bg00217 939 QFQLAIEKtHQSAL-QVQ--QKAEVL-LQAGHYDADAIRECAEKVALHWQ 984 qLlelaaeRkqkLee<-* qL +++R + + bg00217 985 QLMLKMEDRLKLVNA 999 PF00435.11.ls: domain 5 of 5, from 1125 to 1231: score 30.8, E = 4.4e-06 *->lllqqFqrdaddlesWieek.ealLssedyegkdleevqaLlkqlkH +++ F r a++++ Wi+e++e +Ls+ g++ ee+q+Llk + bg00217 1125 QQYVVFERSAKQALDWIQETgEFYLSTHTSTGETTEETQELLK--EY 1169 kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe +++ + +++v+ l +la+ + ++ gh + ei++++ +++++ bg00217 1170 GEFRVPAKQTKEKVKLLI--QLADSF-VEKGHIHATEIRKWVTTVDKHYR 1216 qLlelaaeRkqkLee<-* + ++ + Le bg00217 1217 DFSLRMGKYRYSLEK 1231 PF00435.11.fs: domain 7 of 7, from 1125 to 1217: score 28.7, E = 5.1e-08 *->lllqqFqrdaddlesWieek.ealLssedyegkdleevqaLlkqlkH +++ F r a++++ Wi+e++e +Ls+ g++ ee+q+Llk + bg00217 1125 QQYVVFERSAKQALDWIQETgEFYLSTHTSTGETTEETQELLK--EY 1169 kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe +++ + +++v+ l +la+ + ++ gh + ei++++ +++++ bg00217 1170 GEFRVPAKQTKEKVKLLI--QLADSF-VEKGHIHATEIRKWVTTVDKHYR 1216 q<-* + bg00217 1217 D 1217 PF00621.11.ls: domain 1 of 1, from 1280 to 1450: score 117.8, E = 2.9e-32 *->vlkElleTEkkYvrdLeildnvymkpLreaaiss.kplLtpddieti + +Ell+TEk+YvrdL+ + +y+ ++ + + p+ ++ ++i bg00217 1280 IMAELLQTEKAYVRDLHECLETYLWEMTS--GVEeIPPGILNKEHII 1324 FsNiediyefh.reFLkssLearisssnfedlDekkiepsaqrlGdlFle F+Ni +iy+fh+++FLk +Le+ ++ ++ +G +F bg00217 1325 FGNIQEIYDFHnNIFLK-ELEKYEQL--------------PEDVGHCFVT 1359 lkaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA a+ +q+Y Yc+nkp++ +l+ + + F+e+ ++ ++ bg00217 1360 W-ADKFQMYVTYCKNKPDSNQLILE----HAGTFFDEIQQRHGLA----- 1399 kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkal ++++s+L+kPvqRi++Y+LLLkeLL t + +++ +Lk++l bg00217 1400 ------NSISSYLIKPVQRITKYQLLLKELL--TC---CEEGKGELKDGL 1438 dalqdlaksiNe<-* + + ++k N+ bg00217 1439 EVMLSVPKKAND 1450 PF00621.11.fs: domain 1 of 1, from 1280 to 1450: score 116.0, E = 4.2e-34 *->vlkElleTEkkYvrdLeildnvymkpLreaaiss.kplLtpddieti + +Ell+TEk+YvrdL+ + +y+ ++ + + p+ ++ ++i bg00217 1280 IMAELLQTEKAYVRDLHECLETYLWEMTS--GVEeIPPGILNKEHII 1324 FsNiediyefh.reFLkssLearisssnfedlDekkiepsaqrlGdlFle F+Ni +iy+fh+++FLk +Le+ ++ ++ +G +F bg00217 1325 FGNIQEIYDFHnNIFLK-ELEKYEQL--------------PEDVGHCFVT 1359 lkaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA a+ +q+Y Yc+nkp++ +l+ + + F+e+ ++ ++ bg00217 1360 W-ADKFQMYVTYCKNKPDSNQLILE----HAGTFFDEIQQRHGLA----- 1399 kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkal ++++s+L+kPvqRi++Y+LLLkeLL t + +++ +Lk++l bg00217 1400 ------NSISSYLIKPVQRITKYQLLLKELL--TC---CEEGKGELKDGL 1438 dalqdlaksiNe<-* + + ++k N+ bg00217 1439 EVMLSVPKKAND 1450 PF00169.19.fs: domain 1 of 1, from 1470 to 1575: score 46.4, E = 1.2e-13 *->vikeGwLlkkg...gkkswkkRyfvLfddvLlyykdkk.......kk +i + ++++ +++ +++ ++R+++Lf+ +L++ k+ k++++++++ bg00217 1470 LILQDAFQVWDpksLIRKGRERHLFLFEISLVFSKEIKdssghtkYV 1516 pkgsipLsgiqvtkvpdnkrkncFeirt.dr....etlllqaeseeerke +k ++ s++ vt+++++ +++ F ++++ ++++++ +l+a++ e ++e bg00217 1517 YKNKLLTSELGVTEHVEG-DPCKFALWSgRTpssdNKTVLKASNIETKQE 1565 Wvkaiqsair<-* W+k i+++i bg00217 1566 WIKNIREVIQ 1575 PF00169.19.ls: domain 1 of 1, from 1470 to 1575: score 48.4, E = 2.2e-11 *->vikeGwLlkkg...gkkswkkRyfvLfddvLlyykdkk.......kk +i + ++++ +++ +++ ++R+++Lf+ +L++ k+ k++++++++ bg00217 1470 LILQDAFQVWDpksLIRKGRERHLFLFEISLVFSKEIKdssghtkYV 1516 pkgsipLsgiqvtkvpdnkrkncFeirt.dr....etlllqaeseeerke +k ++ s++ vt+++++ +++ F ++++ ++++++ +l+a++ e ++e bg00217 1517 YKNKLLTSELGVTEHVEG-DPCKFALWSgRTpssdNKTVLKASNIETKQE 1565 Wvkaiqsair<-* W+k i+++i bg00217 1566 WIKNIREVIQ 1575 //