hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-04043962/chunk_1/iprscan-20080807-04043962.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bg00217 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00150 286.5 2e-81 7 SM00325 202.5 3.9e-56 1 SM00516 116.5 2.9e-30 1 SM00233 42.3 6.4e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00516 1/1 42 181 .. 1 184 [] 116.5 2.9e-30 SM00150 1/7 195 311 .. 1 104 [] 45.1 9.5e-09 SM00150 2/7 317 419 .. 1 104 [] 46.6 3.3e-09 SM00150 3/7 422 537 .. 1 104 [] 5.8 2.6 SM00150 4/7 543 645 .. 1 104 [] 57.5 1.7e-12 SM00150 5/7 648 770 .. 1 104 [] 23.6 0.027 SM00150 6/7 897 998 .. 1 104 [] 59.3 4.8e-13 SM00150 7/7 1128 1230 .. 1 104 [] 48.5 8.8e-10 SM00325 1/1 1280 1450 .. 1 211 [] 202.5 3.9e-56 SM00233 1/1 1464 1577 .. 1 82 [] 42.3 6.4e-08 Alignments of top-scoring domains: SM00516: domain 1 of 1, from 42 to 181: score 116.5, E = 2.9e-30 *->elevgkayipggrigtregyDkdGrpVlieragrfdpkgllksvtle l++ a+++ggr Dk+G p+l ++a+ +++ +++ bg00217 42 ILKEKVAFVSGGR-------DKRGGPILTFPARS------NHDRIRQ 75 ellrylvyvlEkalqelpaklekktggiegftvifDlkglsmsnfwspdl e lr lv +l ++ +e + ++ gftvi+D++g++ + bg00217 76 EDLRKLVTYLASVPSE--------DVCKRGFTVIIDMRGSK--------W 109 sllrkilkilqdhYPErLgkvliiNpPwvmaffrvlwkiikpFldektre +l++ +lk+lq+++P+ ++ +lii+p ++ k+ F ++k+ + bg00217 110 DLIKPLLKTLQEAFPAEIHVALIIKPDN------FWQKQKTNFGSSKFIF 153 KivfvgpnkVsdsdwkeeLlkyidpeqLPeelGGtlk<-* +v+ +e L+k +dp+qL+ee+ G+l+ bg00217 154 ETSMVS---------VEGLTKLVDPSQLTEEFDGSLD 181 SM00150: domain 1 of 7, from 195 to 311: score 45.1, E = 9.5e-09 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++F+ a l++ le+ +++l+ ++++ D+e+ ++l+++H +l++ bg00217 195 EEFFNSAVHLLSRLEDLQEMLARKEFP--VDVEGSRRLIDEHTQLKK 239 elaaheervdalnelgeqLiee.................sghpdaeeIee + ++ v++l+++g++L++ + +++ ++++ +++ ++I bg00217 240 --KVLKAPVEELDREGQRLLQCircsdgfsgrncipgsaDFQSLVPKITS 287 rleelnerWeeLlelaeeRrqkLe<-* l++l++ +++L++++ R+ kL+ bg00217 288 LLDKLHSTRQHLHQMWHVRKLKLD 311 SM00150: domain 2 of 7, from 317 to 419: score 46.6, E = 3.3e-09 *->qqFlrdadeleaWleeke..qllssedlgeskDlesveallkkHqal + F +da+ + +W++ ++ l s++++g + + + +l+ +H + bg00217 317 RLFEQDAEKMFDWISHNKelFLQSHTEIG--VSYQYALDLQTQHNHF 361 eaelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlel + ++ + + +L e+ gh+++++I++ ++l+++W++ ++ bg00217 362 AMNSMNAYVNINRIMSVASRLSEA-GHYASQQIKQISTQLDQEWKSFAAA 410 aeeRrqkLe<-* ++eR L bg00217 411 LDERSTILA 419 SM00150: domain 3 of 7, from 422 to 537: score 5.8, E = 2.6 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea F+++a+++++ ++ +++s l+ +++e +++Hq+l + bg00217 422 AVFHQKAEQFLSGVDAWCKMCSEGGLP--SEMQDLELAIHHHQTLYE 466 el.aaheervdalnelgeqLieesghpdaeeIeerl.............e +++a+ e ++ ++l + L + ++ ++e++ + + ++ ++ + + bg00217 467 QVtQAYTEVSQDGKALLDVLQRPLSPGNSESLTATAnyskavhqvldvvH 516 elnerWeeLlelaeeRrqkLe<-* e+ ++ ++L+ ++ R+ +L bg00217 517 EVLHHQRRLESIWQHRKVRLH 537 SM00150: domain 4 of 7, from 543 to 645: score 57.5, E = 1.7e-12 *->qqFlrdadeleaWleeke..qllssedlgeskDlesveallkkHqal F++d++++++W+e+ + l +++ +g k+l ++al+k+H+++ bg00217 543 CVFQQDVQQVLDWIENHGeaFLSKHTGVG--KSLHRARALQKRHDDF 587 eaelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlel e+ ++ d+l e++eqL + g+ d eeI + ++l+ r ++ ++ bg00217 588 EEVAQNTYTNADKLLEAAEQLAQT-GECDPEEIYKAARHLEVRIQDFVRR 636 aeeRrqkLe<-* +e+R+ L+ bg00217 637 VEQRKLLLD 645 SM00150: domain 5 of 7, from 648 to 770: score 23.6, E = 0.027 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea F+ +el W+e+ ++ + + + +++++v++l+k++q+ ++ bg00217 648 VSFHTHTKELWTWMEDLQKEMLEDVCA--DSVDAVQELIKQFQQQQT 692 el.aaheervdalnelgeqLiee....................sghpdae +a + +++ ++l +qL +++++ +++++ +++ +++++ + bg00217 693 ATlDATLNVIKEGEDLIQQLRSAppslgepseardsavsnnktPHSSSIS 742 eIeerleelnerWeeLlelaeeRrqkLe<-* +Ie l++l+++ + +el eR+ kL+ bg00217 743 HIESVLQQLDDAQVQMEELFHERKIKLD 770 SM00150: domain 6 of 7, from 897 to 998: score 59.3, E = 4.8e-13 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale +++++++++++ W+++ e+ l +s + +l+++e+l+++H++++ bg00217 897 RHLQAEVKQVLGWIRNGEsMLNASLVNA--SSLSEAEQLQREHEQFQ 941 aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela ++ +++ ++++ +e L+++ gh+da++I+e e++ +W++L ++ bg00217 942 LAIEKTHQSALQVQQKAEVLLQA-GHYDADAIRECAEKVALHWQQLMLKM 990 eeRrqkLe<-* e+R + + bg00217 991 EDRLKLVN 998 SM00150: domain 7 of 7, from 1128 to 1230: score 48.5, E = 8.8e-10 *->qqFlrdadeleaWleeke..qllssedlgeskDlesveallkkHqal F r a+++++W++e+ + l +++ +g + e+ ++llk+ ++ bg00217 1128 VVFERSAKQALDWIQETGefYLSTHTSTG--ETTEETQELLKEYGEF 1172 eaelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlel + ++ +e+v+ l++l++ ++e+ gh +a eI+++++ +++++++ + bg00217 1173 RVPAKQTKEKVKLLIQLADSFVEK-GHIHATEIRKWVTTVDKHYRDFSLR 1221 aeeRrqkLe<-* + + r Le bg00217 1222 MGKYRYSLE 1230 SM00325: domain 1 of 1, from 1280 to 1450: score 202.5, E = 3.9e-56 *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl ++ ELlqTE++YVrdL++++e++l ++ + + ++p+ ++ +++ bg00217 1280 IMAELLQTEKAYVRDLHECLETYLWEMTSGV--EEIPPGILNKEHII 1324 FgpNieeiyefH.rrFLdeLeerveewllskdlKsernsviedsgerigd Fg Ni+eiy+fH+++FL+eLe++ ++ +e++g+ bg00217 1325 FG-NIQEIYDFHnNIFLKELEKYEQL------------------PEDVGH 1355 vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies +F+ + ++ f++Y +Yc+n+pd+ +l+ + + F++++++++ bg00217 1356 CFVTW---ADKFQMYVTYCKNKPDSNQLILE-----HAGTFFDEIQQRHG 1397 kpncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLk +n +++s+LikPvQR+tkY+LLLkell +++ e + +Lk bg00217 1398 LAN---------SISSYLIKPVQRITKYQLLLKELLTCCE---EGKGELK 1435 kAleaikelasqvNe<-* + le++ +++++ N+ bg00217 1436 DGLEVMLSVPKKAND 1450 SM00233: domain 1 of 1, from 1464 to 1577: score 42.3, E = 6.4e-08 *->vikeGwLlkks..........k.swkkryfvLfngvLlyyksk.... + +G L + + ++++ ++ ++r+++Lf+ +L++ k+ ++++ bg00217 1464 LDVQGELILQDafqvwdpkslIrKGRERHLFLFEISLVFSKEIkdss 1510 .....kpkgsipLsgcsvre.p.....cFeivt.dr.....tlllqAese ++++ +k ++ s++ v+e++++++ F ++++ +++++ +l+A++ bg00217 1511 ghtkyVYKNKLLTSELGVTEhVegdpcKFALWSgRTpssdnKTVLKASNI 1560 eereeWvealqsaiaka<-* e+++eW++ ++++i++ bg00217 1561 ETKQEWIKNIREVIQER 1577 //