hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-04281083/chunk_1/iprscan-20080807-04281083.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bh00117 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 573.6 1.7e-169 30 PF00096.16.fs Zinc finger, C2H2 type 523.3 2.5e-154 31 PF07975.2.fs TFIIH C1-like domain 25.6 1.2e-06 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 2/31 144 166 .. 1 24 [] 29.2 5e-06 PF00096.16.ls 2/30 144 166 .. 1 24 [] 31.2 3.4e-06 PF00096.16.ls 3/30 172 194 .. 1 24 [] 18.3 0.026 PF00096.16.fs 4/31 200 222 .. 1 24 [] 29.4 4.4e-06 PF00096.16.ls 4/30 200 222 .. 1 24 [] 31.4 3e-06 PF00096.16.ls 5/30 228 250 .. 1 24 [] 24.0 0.00049 PF00096.16.ls 10/30 463 486 .. 1 24 [] 18.6 0.021 PF00096.16.ls 12/30 539 562 .. 1 24 [] 19.0 0.016 PF00096.16.fs 14/31 660 682 .. 1 24 [] 25.4 4.5e-05 PF00096.16.ls 14/30 660 682 .. 1 24 [] 27.4 4.8e-05 PF00096.16.fs 15/31 690 712 .. 1 24 [] 23.9 0.00011 PF00096.16.ls 15/30 690 712 .. 1 24 [] 25.8 0.00014 PF00096.16.ls 16/30 720 743 .. 1 24 [] 25.0 0.00025 PF00096.16.fs 16/31 720 743 .. 1 24 [] 23.0 0.00017 PF00096.16.ls 17/30 748 771 .. 1 24 [] 19.1 0.014 PF00096.16.ls 18/30 778 801 .. 1 24 [] 20.7 0.0048 PF00096.16.ls 21/30 912 935 .. 1 24 [] 21.4 0.003 PF00096.16.ls 22/30 956 978 .. 1 24 [] 26.8 7.3e-05 PF00096.16.fs 22/31 956 978 .. 1 24 [] 24.8 6.2e-05 PF00096.16.fs 23/31 985 1007 .. 1 24 [] 23.9 0.0001 PF00096.16.ls 23/30 985 1007 .. 1 24 [] 25.9 0.00013 PF00096.16.ls 26/30 1164 1187 .. 1 24 [] 20.8 0.0044 PF00096.16.ls 28/30 1251 1273 .. 1 24 [] 19.7 0.0097 PF00096.16.ls 29/30 1282 1305 .. 1 24 [] 23.6 0.00063 PF00096.16.ls 30/30 1312 1335 .. 1 24 [] 20.1 0.0072 Alignments of top-scoring domains: PF00096.16.fs: domain 2 of 31, from 144 to 166: score 29.2, E = 5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ C+ksFsr s Lk+H ++H bh00117 144 YPCQ-FCDKSFSRLSYLKHHEQSH 166 PF00096.16.ls: domain 2 of 30, from 144 to 166: score 31.2, E = 3.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ C+ksFsr s Lk+H ++H bh00117 144 YPCQ-FCDKSFSRLSYLKHHEQSH 166 PF00096.16.ls: domain 3 of 30, from 172 to 194: score 18.3, E = 0.026 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C + F++k + rH++ H bh00117 172 FKCT-YCSRLFKHKRSRDRHIKLH 194 PF00096.16.fs: domain 4 of 31, from 200 to 222: score 29.4, E = 4.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C+ +Fsr+++Lk Hl+tH bh00117 200 YHCS-ECDAAFSRSDHLKIHLKTH 222 PF00096.16.ls: domain 4 of 30, from 200 to 222: score 31.4, E = 3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C+ +Fsr+++Lk Hl+tH bh00117 200 YHCS-ECDAAFSRSDHLKIHLKTH 222 PF00096.16.ls: domain 5 of 30, from 228 to 250: score 24.0, E = 0.00049 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +C + F ++s+L+ H+++H bh00117 228 YKCA-ICRRGFLSSSSLHGHMQVH 250 PF00096.16.ls: domain 10 of 30, from 463 to 486: score 18.6, E = 0.021 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + C+ +C ++ + +nL+ Hl+ H bh00117 463 HICQ-YCLEVLPSLYNLNEHLKQvH 486 PF00096.16.ls: domain 12 of 30, from 539 to 562: score 19.0, E = 0.016 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + Cp +C F + s+L+ H+r H bh00117 539 FFCP-HCYMGFLTDSSLEEHIRQvH 562 PF00096.16.fs: domain 14 of 31, from 660 to 682: score 25.4, E = 4.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg ++++ +++++Hl+tH bh00117 660 YICN-QCGAKYTSLDSFQTHLKTH 682 PF00096.16.ls: domain 14 of 30, from 660 to 682: score 27.4, E = 4.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg ++++ +++++Hl+tH bh00117 660 YICN-QCGAKYTSLDSFQTHLKTH 682 PF00096.16.fs: domain 15 of 31, from 690 to 712: score 23.9, E = 0.00011 *->ykCpfdCgksFsrksnLkrHlrtH<-* +Cp +C+k F ++++L +H +H bh00117 690 LTCP-QCNKEFPNQESLLKHVTIH 712 PF00096.16.ls: domain 15 of 30, from 690 to 712: score 25.8, E = 0.00014 *->ykCpfdCgksFsrksnLkrHlrtH<-* +Cp +C+k F ++++L +H +H bh00117 690 LTCP-QCNKEFPNQESLLKHVTIH 712 PF00096.16.ls: domain 16 of 30, from 720 to 743: score 25.0, E = 0.00025 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ C+k F++ ++L++Hl H bh00117 720 YICE-SCDKQFTSVDDLQKHLLDmH 743 PF00096.16.fs: domain 16 of 31, from 720 to 743: score 23.0, E = 0.00017 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ C+k F++ ++L++Hl H bh00117 720 YICE-SCDKQFTSVDDLQKHLLDmH 743 PF00096.16.ls: domain 17 of 30, from 748 to 771: score 19.1, E = 0.014 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ C+++F +k + + Hl ++H bh00117 748 FRCT-LCQEVFDSKVSIQLHLAVkH 771 PF00096.16.ls: domain 18 of 30, from 778 to 801: score 20.7, E = 0.0048 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ C+ F++ +L+ H + +H bh00117 778 YRCT-SCNWDFRNETDLQLHVKHnH 801 PF00096.16.ls: domain 21 of 30, from 912 to 935: score 21.4, E = 0.003 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +Cg +++ L++H+ ++H bh00117 912 YGCD-ICGAAYTMETLLQNHQLRdH 935 PF00096.16.ls: domain 22 of 30, from 956 to 978: score 26.8, E = 7.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C ++F + L+ H++tH bh00117 956 YKCN-VCSRTFFSENGLREHMQTH 978 PF00096.16.fs: domain 22 of 31, from 956 to 978: score 24.8, E = 6.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C ++F + L+ H++tH bh00117 956 YKCN-VCSRTFFSENGLREHMQTH 978 PF00096.16.fs: domain 23 of 31, from 985 to 1007: score 23.9, E = 0.0001 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cg++F + +L+ H+ tH bh00117 985 YMCP-ICGERFPSLLTLTEHKVTH 1007 PF00096.16.ls: domain 23 of 30, from 985 to 1007: score 25.9, E = 0.00013 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cg++F + +L+ H+ tH bh00117 985 YMCP-ICGERFPSLLTLTEHKVTH 1007 PF00096.16.ls: domain 26 of 30, from 1164 to 1187: score 20.8, E = 0.0044 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +C+ C+ +F + s+L++H++t H bh00117 1164 TRCS-SCNVKFESESELQNHIQTiH 1187 PF00096.16.ls: domain 28 of 30, from 1251 to 1273: score 19.7, E = 0.0097 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C ++F +++ L+ Hl H bh00117 1251 HECK-LCSQTFDSPAKLQCHLIEH 1273 PF00096.16.ls: domain 29 of 30, from 1282 to 1305: score 23.6, E = 0.00063 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +kCp +C ++F + L++H+ + H bh00117 1282 FKCP-VCFTVFVQANKLQQHIFSaH 1305 PF00096.16.ls: domain 30 of 30, from 1312 to 1335: score 20.1, E = 0.0072 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +C ++F + +L++H +t+H bh00117 1312 YDCT-QCPQKFFFQTELQNHTMTqH 1335 //