hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-04281083/chunk_1/iprscan-20080807-04281083.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bh00117 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 661.3 2.9e-194 30 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/30 73 93 .. 1 23 [] 1.1 2.4e+02 SM00355 2/30 144 166 .. 1 23 [] 26.2 0.0045 SM00355 3/30 172 194 .. 1 23 [] 21.1 0.16 SM00355 4/30 200 222 .. 1 23 [] 27.7 0.0016 SM00355 5/30 228 250 .. 1 23 [] 23.9 0.023 SM00355 6/30 272 295 .. 1 23 [] 18.8 0.78 SM00355 7/30 307 330 .. 1 23 [] 20.0 0.33 SM00355 8/30 336 358 .. 1 23 [] 22.3 0.067 SM00355 9/30 431 455 .. 1 23 [] 19.4 0.52 SM00355 10/30 463 486 .. 1 23 [] 22.2 0.074 SM00355 11/30 503 526 .. 1 23 [] 25.0 0.01 SM00355 12/30 539 562 .. 1 23 [] 22.4 0.063 SM00355 13/30 586 611 .. 1 23 [] 17.3 2.2 SM00355 14/30 660 682 .. 1 23 [] 28.0 0.0013 SM00355 15/30 690 712 .. 1 23 [] 30.4 0.00025 SM00355 16/30 720 743 .. 1 23 [] 28.8 0.00073 SM00355 17/30 748 771 .. 1 23 [] 25.2 0.0093 SM00355 18/30 778 801 .. 1 23 [] 25.5 0.0073 SM00355 19/30 809 831 .. 1 23 [] 23.8 0.024 SM00355 20/30 835 858 .. 1 23 [] 22.8 0.046 SM00355 21/30 912 935 .. 1 23 [] 17.3 2.2 SM00355 22/30 956 978 .. 1 23 [] 33.2 3.6e-05 SM00355 23/30 985 1007 .. 1 23 [] 28.8 0.00075 SM00355 24/30 1014 1036 .. 1 23 [] 13.8 8.8 SM00355 25/30 1046 1068 .. 1 23 [] 6.5 58 SM00355 26/30 1164 1187 .. 1 23 [] 23.8 0.023 SM00355 27/30 1221 1243 .. 1 23 [] 23.5 0.029 SM00355 28/30 1251 1273 .. 1 23 [] 20.3 0.27 SM00355 29/30 1282 1305 .. 1 23 [] 23.3 0.033 SM00355 30/30 1312 1335 .. 1 23 [] 19.0 0.67 Alignments of top-scoring domains: SM00355: domain 1 of 30, from 73 to 93: score 1.1, E = 2.4e+02 *->ykCpigCgksfssk.aLkrHmrvH<-* + C+ C ++f s ++ ++H bh00117 73 HSCDS-CLQVFESLsDITEHKI-- 93 SM00355: domain 2 of 30, from 144 to 166: score 26.2, E = 0.0045 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C+ksfs+ + Lk+H ++H bh00117 144 YPCQF-CDKSFSRLsYLKHHEQSH 166 SM00355: domain 3 of 30, from 172 to 194: score 21.1, E = 0.16 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C++ f++k++ rH++ H bh00117 172 FKCTY-CSRLFKHKrSRDRHIKLH 194 SM00355: domain 4 of 30, from 200 to 222: score 27.7, E = 0.0016 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C+ fs+ ++Lk H+++H bh00117 200 YHCSE-CDAAFSRSdHLKIHLKTH 222 SM00355: domain 5 of 30, from 228 to 250: score 23.9, E = 0.023 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC i C + f s ++L Hm+vH bh00117 228 YKCAI-CRRGFLSSsSLHGHMQVH 250 SM00355: domain 6 of 30, from 272 to 295: score 18.8, E = 0.78 *->ykCpigCgksfssk.aLkrHmr.vH<-* kC++ C + f +++L++H+ + H bh00117 272 QKCSQ-CEEGFDFPeDLQKHIAeCH 295 SM00355: domain 7 of 30, from 307 to 330: score 20.0, E = 0.33 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C + C++ f +++L +Hm +vH bh00117 307 LQCVY-CHELFVEEtSLMNHMEqVH 330 SM00355: domain 8 of 30, from 336 to 358: score 22.3, E = 0.067 *->ykCpigCgksfssk.aLkrHmrvH<-* C+i C++sf++ ++L Hm +H bh00117 336 NSCSI-CSESFHTVeELYSHMDSH 358 SM00355: domain 9 of 30, from 431 to 455: score 19.4, E = 0.52 *->ykCpigCg.ksfssk.aLkrHmr.vH<-* y C + C+++ fss L+ H++++H bh00117 431 YSCIY-CNkQLFSSLaVLQIHLKtMH 455 SM00355: domain 10 of 30, from 463 to 486: score 22.2, E = 0.074 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C++ C ++ +s +L++H+++vH bh00117 463 HICQY-CLEVLPSLyNLNEHLKqVH 486 SM00355: domain 11 of 30, from 503 to 526: score 25.0, E = 0.01 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C++ C+++ ++ + L++H+r +H bh00117 503 YQCNF-CSEVVNDLnTLQEHIRcSH 526 SM00355: domain 12 of 30, from 539 to 562: score 22.4, E = 0.063 *->ykCpigCgksfssk.aLkrHmr.vH<-* + Cp+ C + f + ++L++H+r+vH bh00117 539 FFCPH-CYMGFLTDsSLEEHIRqVH 562 SM00355: domain 13 of 30, from 586 to 611: score 17.3, E = 2.2 *->ykCpigCg..ksfssk.aLkrHmr.vH<-* y C++ C ++ f+s L++H+++ H bh00117 586 YSCSY-CTnsPIFNSVlKLNKHIKeNH 611 SM00355: domain 14 of 30, from 660 to 682: score 28.0, E = 0.0013 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cg +++s ++++ H+++H bh00117 660 YICNQ-CGAKYTSLdSFQTHLKTH 682 SM00355: domain 15 of 30, from 690 to 712: score 30.4, E = 0.00025 *->ykCpigCgksfssk.aLkrHmrvH<-* ++Cp+ C+k f+++++L +H+ +H bh00117 690 LTCPQ-CNKEFPNQeSLLKHVTIH 712 SM00355: domain 16 of 30, from 720 to 743: score 28.8, E = 0.00073 *->ykCpigCgksfssk.aLkrHmr.vH<-* y C+ C+k+f+s ++L++H+ ++H bh00117 720 YICES-CDKQFTSVdDLQKHLLdMH 743 SM00355: domain 17 of 30, from 748 to 771: score 25.2, E = 0.0093 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C++ C+++f sk + + H+ +H bh00117 748 FRCTL-CQEVFDSKvSIQLHLAvKH 771 SM00355: domain 18 of 30, from 778 to 801: score 25.5, E = 0.0073 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C+ C++ f+++++L+ H+++ H bh00117 778 YRCTS-CNWDFRNEtDLQLHVKhNH 801 SM00355: domain 19 of 30, from 809 to 831: score 23.8, E = 0.024 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC + Cg+sf ++ +L+ H+ +H bh00117 809 HKCIF-CGESFGTEvELQCHITTH 831 SM00355: domain 20 of 30, from 835 to 858: score 22.8, E = 0.046 *->ykCpigCgksfssk.aLkrHmr.vH<-* y C++ C+k f+ L++H+r++H bh00117 835 YNCKF-CSKAFHAIiLLEKHLReKH 858 SM00355: domain 21 of 30, from 912 to 935: score 17.3, E = 2.2 *->ykCpigCgksfssk.aLkrHmr.vH<-* y C+i Cg ++ ++ L++H+ + H bh00117 912 YGCDI-CGAAYTMEtLLQNHQLrDH 935 SM00355: domain 22 of 30, from 956 to 978: score 33.2, E = 3.6e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C+++f s++ L++Hm++H bh00117 956 YKCNV-CSRTFFSEnGLREHMQTH 978 SM00355: domain 23 of 30, from 985 to 1007: score 28.8, E = 0.00075 *->ykCpigCgksfssk.aLkrHmrvH<-* y Cpi Cg++f+s L++H +H bh00117 985 YMCPI-CGERFPSLlTLTEHKVTH 1007 SM00355: domain 24 of 30, from 1014 to 1036: score 13.8, E = 8.8 *->ykCpigCgksfssk.aLkrHmrvH<-* C i C++ s++++ +H ++H bh00117 1014 GNCRI-CKMPLQSEeEFLEHCQMH 1036 SM00355: domain 25 of 30, from 1046 to 1068: score 6.5, E = 58 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + C ++ +s +Lk H H bh00117 1046 FRCVV-CMQTVTSTlELKIHGTFH 1068 SM00355: domain 26 of 30, from 1164 to 1187: score 23.8, E = 0.023 *->ykCpigCgksfssk.aLkrHmr.vH<-* +C+ C+ +f s+++L++H++++H bh00117 1164 TRCSS-CNVKFESEsELQNHIQtIH 1187 SM00355: domain 27 of 30, from 1221 to 1243: score 23.5, E = 0.029 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + C+++f ++ + + H+ H bh00117 1221 YQCIK-CQMVFYNEwDIQVHVANH 1243 SM00355: domain 28 of 30, from 1251 to 1273: score 20.3, E = 0.27 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C+++f s+ L+ H+ H bh00117 1251 HECKL-CSQTFDSPaKLQCHLIEH 1273 SM00355: domain 29 of 30, from 1282 to 1305: score 23.3, E = 0.033 *->ykCpigCgksfssk.aLkrHmr.vH<-* +kCp+ C +f +++ L++H+ + H bh00117 1282 FKCPV-CFTVFVQAnKLQQHIFsAH 1305 SM00355: domain 30 of 30, from 1312 to 1335: score 19.0, E = 0.67 *->ykCpigCgksfssk.aLkrHmr.vH<-* y C++ C+++f +++L++H +++H bh00117 1312 YDCTQ-CPQKFFFQtELQNHTMtQH 1335 //