hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-04512975/chunk_1/iprscan-20080807-04512975.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bh00196 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00520.21.ls Ion transport protein 152.5 1e-42 1 PF00520.21.fs Ion transport protein 150.7 3.5e-42 1 PF02214.13.fs K+ channel tetramerisation domain 139.2 2e-41 1 PF02214.13.ls K+ channel tetramerisation domain 141.1 2.8e-39 1 PF07885.6.fs Ion channel 51.5 1.4e-14 1 PF07885.6.ls Ion channel 53.5 6.6e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02214.13.fs 1/1 13 154 .. 1 102 [] 139.2 2e-41 PF02214.13.ls 1/1 13 154 .. 1 102 [] 141.1 2.8e-39 PF00520.21.ls 1/1 287 475 .. 1 224 [] 152.5 1e-42 PF00520.21.fs 1/1 287 475 .. 1 224 [] 150.7 3.5e-42 PF07885.6.fs 1/1 391 485 .. 1 81 [] 51.5 1.4e-14 PF07885.6.ls 1/1 391 485 .. 1 81 [] 53.5 6.6e-13 Alignments of top-scoring domains: PF02214.13.fs: domain 1 of 1, from 13 to 154: score 139.2, E = 2e-41 *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktds............. v+LNVGG+r+eT++sTL ++ P T+L l++ s+++++ ++ +++ bh00196 13 VILNVGGTRHETYRSTLKTL-PGTRLALLAS--Seppgdclttagdk 56 ..................................heailrlcdfydddtn ++++++ +++++ ++ ++++++ +++ ++ +++ ++ d + bh00196 57 lqpsppplsppprapplspgpggcfeggagncssRGGRA--SDHPGGGR- 103 EyFFDRsPkhFetILnfYRtGdGkLhrp.evcldsfleEleFygldelai E+FFDR+P++F ++Ln+YRt GkLh+p +vc f+eEl+F+g+de ++ bh00196 104 EFFFDRHPGVFAYVLNYYRT--GKLHCPaDVCGPLFEEELAFWGIDETDV 151 elC<-* e+C bh00196 152 EPC 154 PF02214.13.ls: domain 1 of 1, from 13 to 154: score 141.1, E = 2.8e-39 *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktds............. v+LNVGG+r+eT++sTL ++ P T+L l++ s+++++ ++ +++ bh00196 13 VILNVGGTRHETYRSTLKTL-PGTRLALLAS--Seppgdclttagdk 56 ..................................heailrlcdfydddtn ++++++ +++++ ++ ++++++ +++ ++ +++ ++ d + bh00196 57 lqpsppplsppprapplspgpggcfeggagncssRGGRA--SDHPGGGR- 103 EyFFDRsPkhFetILnfYRtGdGkLhrp.evcldsfleEleFygldelai E+FFDR+P++F ++Ln+YRt GkLh+p +vc f+eEl+F+g+de ++ bh00196 104 EFFFDRHPGVFAYVLNYYRT--GKLHCPaDVCGPLFEEELAFWGIDETDV 151 elC<-* e+C bh00196 152 EPC 154 PF00520.21.ls: domain 1 of 1, from 287 to 475: score 152.5, E = 1e-42 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl +++ v++v+Ft+E+l++i+ +k + ++++ Ni+Df+++l bh00196 287 YVEGVCVVWFTFEFLVRIVFSSNK------LEFIKNLLNIIDFVAIL 327 pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL p+++++ ls l ++ ++l++lr++R++R L bh00196 328 PFYLEVGLSGLS------------------SkAAKDVLGFLRVVRFVRIL 359 RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii R+++l+r + g lr+l +l s l ++++l+l ++iFa + bh00196 360 RIFKLTRHFVG-----LRVL--GHTLRASTNEFLLLIIFLALGVLIFATM 402 gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtla ++ + + ++t F +++ +f+w+ +tmTt G+gd++p+ bh00196 403 IYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQ--- 449 gtvlgyiyfvsfiilgsflllNLfiavi<-* t+ g++++ +++ l+++l+++++++vi bh00196 450 -TWSGMLVG-ALCALAGVLTIAMPVPVI 475 PF00520.21.fs: domain 1 of 1, from 287 to 475: score 150.7, E = 3.5e-42 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl +++ v++v+Ft+E+l++i+ +k + ++++ Ni+Df+++l bh00196 287 YVEGVCVVWFTFEFLVRIVFSSNK------LEFIKNLLNIIDFVAIL 327 pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL p+++++ ls l ++ ++l++lr++R++R L bh00196 328 PFYLEVGLSGLS------------------SkAAKDVLGFLRVVRFVRIL 359 RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii R+++l+r + g lr+l +l s l ++++l+l ++iFa + bh00196 360 RIFKLTRHFVG-----LRVL--GHTLRASTNEFLLLIIFLALGVLIFATM 402 gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtla ++ + + ++t F +++ +f+w+ +tmTt G+gd++p+ bh00196 403 IYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQ--- 449 gtvlgyiyfvsfiilgsflllNLfiavi<-* t+ g++++ +++ l+++l+++++++vi bh00196 450 -TWSGMLVG-ALCALAGVLTIAMPVPVI 475 PF07885.6.fs: domain 1 of 1, from 391 to 485: score 51.5, E = 1.4e-14 *->iilllvlifgtvyyal.............epeegwewsfldalYFsf ++ l vlif+t +y+ ++ + ++++++ +e+ ++ + ++++++ bh00196 391 FLALGVLIFATMIYYAervgaqpndpsasEHTQFK--NIPIGFWWAV 435 vTlTTiGYGDivPlstdaGRlftivyiliGiplfalll....avlgrflt vT+TT GYGD++P+ t G l+ + +l G+ +a+ ++ +++g + + bh00196 436 VTMTTLGYGDMYPQ-TWSGMLVGALCALAGVLTIAMPVpvivNNFGMYYS 484 e<-* bh00196 485 L 485 PF07885.6.ls: domain 1 of 1, from 391 to 485: score 53.5, E = 6.6e-13 *->iilllvlifgtvyyal.............epeegwewsfldalYFsf ++ l vlif+t +y+ ++ + ++++++ +e+ ++ + ++++++ bh00196 391 FLALGVLIFATMIYYAervgaqpndpsasEHTQFK--NIPIGFWWAV 435 vTlTTiGYGDivPlstdaGRlftivyiliGiplfalll....avlgrflt vT+TT GYGD++P+ t G l+ + +l G+ +a+ ++ +++g + + bh00196 436 VTMTTLGYGDMYPQ-TWSGMLVGALCALAGVLTIAMPVpvivNNFGMYYS 484 e<-* bh00196 485 L 485 //