# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obh00252.fasta.nr -Q bh00252.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bh00252, 159 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6821389 sequences Expectation_n fit: rho(ln(x))= 4.4306+/-0.000184; mu= 10.5029+/- 0.010 mean_var=68.5542+/-13.022, 0's: 39 Z-trim: 54 B-trim: 25 in 1/65 Lambda= 0.154902 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089098|dbj|BAD92993.1| cysteine and glycine-r ( 159) 1146 264.2 5.1e-69 gi|47605401|sp|P97315|CSRP1_MOUSE Cysteine and gly ( 193) 975 226.1 1.9e-57 gi|118161|sp|P21291|CSRP1_HUMAN Cysteine and glyci ( 193) 975 226.1 1.9e-57 gi|54695908|gb|AAV38326.1| cysteine and glycine-ri ( 194) 975 226.1 1.9e-57 gi|148707626|gb|EDL39573.1| cysteine and glycine-r ( 208) 975 226.1 1.9e-57 gi|158261289|dbj|BAF82822.1| unnamed protein produ ( 193) 972 225.4 2.9e-57 gi|75061939|sp|Q5RCT4.3|CSRP1_PONAB Cysteine and g ( 193) 971 225.2 3.4e-57 gi|1345932|sp|P47875|CSRP1_RAT Cysteine and glycin ( 193) 969 224.7 4.7e-57 gi|149743847|ref|XP_001494732.1| PREDICTED: simila ( 193) 957 222.0 3e-56 gi|126306662|ref|XP_001363524.1| PREDICTED: simila ( 193) 957 222.0 3e-56 gi|82592776|sp|Q3MHY1|CSRP1_BOVIN Cysteine and gly ( 193) 950 220.5 8.9e-56 gi|119611776|gb|EAW91370.1| cysteine and glycine-r ( 177) 936 217.3 7.3e-55 gi|114571794|ref|XP_514095.2| PREDICTED: similar t ( 367) 936 217.6 1.2e-54 gi|149058530|gb|EDM09687.1| cysteine and glycine-r ( 167) 895 208.1 4e-52 gi|54036925|sp|P67966|CSRP1_CHICK Cysteine and gly ( 192) 873 203.3 1.3e-50 gi|73960267|ref|XP_856542.1| PREDICTED: similar to ( 200) 862 200.8 7.6e-50 gi|5107470|pdb|1B8T|A Chain A, Solution Structure ( 192) 853 198.8 3e-49 gi|51895830|gb|AAH81239.1| MGC85577 protein [Xenop ( 193) 834 194.6 5.7e-48 gi|49904299|gb|AAH77045.1| Cysteine and glycine-ri ( 193) 827 193.0 1.7e-47 gi|194037716|ref|XP_001927315.1| PREDICTED: simila ( 193) 796 186.1 2e-45 gi|149632336|ref|XP_001505811.1| PREDICTED: simila ( 227) 793 185.5 3.6e-45 gi|461908|sp|Q05158|CSRP2_COTJA Cysteine and glyci ( 194) 792 185.2 3.8e-45 gi|55562723|gb|AAH86356.1| Csrp2 protein [Rattus n ( 184) 791 184.9 4.3e-45 gi|41944579|gb|AAH65956.1| Cysteine and glycine-ri ( 192) 791 184.9 4.4e-45 gi|47605400|sp|P97314|CSRP2_MOUSE Cysteine and gly ( 193) 791 185.0 4.4e-45 gi|1705932|sp|P50460|CSRP2_CHICK Cysteine and glyc ( 194) 791 185.0 4.4e-45 gi|148689771|gb|EDL21718.1| cysteine and glycine-r ( 197) 791 185.0 4.5e-45 gi|2497675|sp|Q62908|CSRP2_RAT Cysteine and glycin ( 193) 788 184.3 7e-45 gi|13279065|gb|AAH04265.1|AAH04265 Similar to cyst ( 168) 787 184.0 7.5e-45 gi|12849530|dbj|BAB28379.1| unnamed protein produc ( 193) 787 184.1 8.2e-45 gi|2497674|sp|Q16527|CSRP2_HUMAN Cysteine and glyc ( 193) 786 183.8 9.6e-45 gi|54696686|gb|AAV38715.1| cysteine and glycine-ri ( 194) 786 183.8 9.6e-45 gi|12833926|dbj|BAB22716.1| unnamed protein produc ( 193) 785 183.6 1.1e-44 gi|3980201|emb|CAA76736.1| cysteine-rich-protein [ ( 192) 781 182.7 2.1e-44 gi|126276996|ref|XP_001365655.1| PREDICTED: simila ( 193) 780 182.5 2.4e-44 gi|39794621|gb|AAH64303.1| Zgc:77740 [Danio rerio] ( 193) 776 181.6 4.5e-44 gi|120538688|gb|AAI29418.1| Zgc:158737 [Danio reri ( 192) 759 177.8 6.3e-43 gi|89269924|emb|CAJ81889.1| cysteine and glycine-r ( 192) 740 173.6 1.2e-41 gi|51260944|gb|AAH79792.1| MGC86339 protein [Xenop ( 192) 738 173.1 1.6e-41 gi|51703896|gb|AAH81064.1| MGC81964 protein [Xenop ( 192) 733 172.0 3.5e-41 gi|89242514|gb|ABD64615.1| cysteine- and glycine-r ( 192) 708 166.4 1.7e-39 gi|109018946|ref|XP_001098252.1| PREDICTED: simila ( 304) 697 164.1 1.3e-38 gi|90086055|dbj|BAE91580.1| unnamed protein produc ( 156) 693 163.0 1.5e-38 gi|189521058|ref|XP_001923267.1| PREDICTED: simila ( 193) 692 162.8 2e-38 gi|53733881|gb|AAH83395.1| Cysteine and glycine-ri ( 193) 692 162.8 2e-38 gi|73988710|ref|XP_865526.1| PREDICTED: similar to ( 193) 688 161.9 3.8e-38 gi|47077530|dbj|BAD18652.1| unnamed protein produc ( 191) 687 161.7 4.4e-38 gi|1705933|sp|P50461|CSRP3_HUMAN Cysteine and glyc ( 194) 682 160.6 9.5e-38 gi|73988706|ref|XP_852328.1| PREDICTED: similar to ( 194) 682 160.6 9.5e-38 gi|109107040|ref|XP_001095315.1| PREDICTED: cystei ( 194) 682 160.6 9.5e-38 >>gi|62089098|dbj|BAD92993.1| cysteine and glycine-rich (159 aa) initn: 1146 init1: 1146 opt: 1146 Z-score: 1394.3 bits: 264.2 E(): 5.1e-69 Smith-Waterman score: 1146; 100.000% identity (100.000% similar) in 159 aa overlap (1-159:1-159) 10 20 30 40 50 60 bh0025 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSC 10 20 30 40 50 60 70 80 90 100 110 120 bh0025 YGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 YGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCPR 70 80 90 100 110 120 130 140 150 bh0025 CSQAVYAAEKVIGAGKVRWLLGMRGMGGDIFLKCGFQNF ::::::::::::::::::::::::::::::::::::::: gi|620 CSQAVYAAEKVIGAGKVRWLLGMRGMGGDIFLKCGFQNF 130 140 150 >>gi|47605401|sp|P97315|CSRP1_MOUSE Cysteine and glycine (193 aa) initn: 973 init1: 973 opt: 975 Z-score: 1186.7 bits: 226.1 E(): 1.9e-57 Smith-Waterman score: 975; 98.561% identity (98.561% similar) in 139 aa overlap (1-139:2-139) 10 20 30 40 50 bh0025 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 10 20 30 40 50 60 60 70 80 90 100 110 bh0025 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP 70 80 90 100 110 120 120 130 140 150 bh0025 RCSQAVYAAEKVIGAGKVRWLLGMRGMGGDIFLKCGFQNF ::::::::::::::::: : gi|476 RCSQAVYAAEKVIGAGK-SWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 130 140 150 160 170 >>gi|118161|sp|P21291|CSRP1_HUMAN Cysteine and glycine-r (193 aa) initn: 973 init1: 973 opt: 975 Z-score: 1186.7 bits: 226.1 E(): 1.9e-57 Smith-Waterman score: 975; 98.561% identity (98.561% similar) in 139 aa overlap (1-139:2-139) 10 20 30 40 50 bh0025 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 10 20 30 40 50 60 60 70 80 90 100 110 bh0025 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP 70 80 90 100 110 120 120 130 140 150 bh0025 RCSQAVYAAEKVIGAGKVRWLLGMRGMGGDIFLKCGFQNF ::::::::::::::::: : gi|118 RCSQAVYAAEKVIGAGK-SWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 130 140 150 160 170 >>gi|54695908|gb|AAV38326.1| cysteine and glycine-rich p (194 aa) initn: 973 init1: 973 opt: 975 Z-score: 1186.7 bits: 226.1 E(): 1.9e-57 Smith-Waterman score: 975; 98.561% identity (98.561% similar) in 139 aa overlap (1-139:2-139) 10 20 30 40 50 bh0025 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 10 20 30 40 50 60 60 70 80 90 100 110 bh0025 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP 70 80 90 100 110 120 120 130 140 150 bh0025 RCSQAVYAAEKVIGAGKVRWLLGMRGMGGDIFLKCGFQNF ::::::::::::::::: : gi|546 RCSQAVYAAEKVIGAGK-SWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 130 140 150 160 170 >>gi|148707626|gb|EDL39573.1| cysteine and glycine-rich (208 aa) initn: 973 init1: 973 opt: 975 Z-score: 1186.3 bits: 226.1 E(): 1.9e-57 Smith-Waterman score: 975; 98.561% identity (98.561% similar) in 139 aa overlap (1-139:17-154) 10 20 30 40 bh0025 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLD :::::::::::::::::::::::::::::::::::::::::::: gi|148 ACDSPCGLGLPGQSRMPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLD 10 20 30 40 50 60 50 60 70 80 90 100 bh0025 STTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 STTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPN 70 80 90 100 110 120 110 120 130 140 150 bh0025 ASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKVRWLLGMRGMGGDIFLKCGFQNF :::::::::::::::::::::::::::::::: : gi|148 ASKFAQKIGGSERCPRCSQAVYAAEKVIGAGK-SWHKSCFRCAKCGKGLESTTLADKDGE 130 140 150 160 170 gi|148 IYCKGCYAKNFGPKGFGFGQGAGALVHSE 180 190 200 >>gi|158261289|dbj|BAF82822.1| unnamed protein product [ (193 aa) initn: 970 init1: 970 opt: 972 Z-score: 1183.1 bits: 225.4 E(): 2.9e-57 Smith-Waterman score: 972; 97.842% identity (98.561% similar) in 139 aa overlap (1-139:2-139) 10 20 30 40 50 bh0025 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 10 20 30 40 50 60 60 70 80 90 100 110 bh0025 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP ::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: gi|158 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIRHEEAPGHRPTTNPNASKFAQKIGGSERCP 70 80 90 100 110 120 120 130 140 150 bh0025 RCSQAVYAAEKVIGAGKVRWLLGMRGMGGDIFLKCGFQNF ::::::::::::::::: : gi|158 RCSQAVYAAEKVIGAGK-SWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 130 140 150 160 170 >>gi|75061939|sp|Q5RCT4.3|CSRP1_PONAB Cysteine and glyci (193 aa) initn: 969 init1: 969 opt: 971 Z-score: 1181.9 bits: 225.2 E(): 3.4e-57 Smith-Waterman score: 971; 97.842% identity (98.561% similar) in 139 aa overlap (1-139:2-139) 10 20 30 40 50 bh0025 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 10 20 30 40 50 60 60 70 80 90 100 110 bh0025 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|750 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEESPGHRPTTNPNASKFAQKIGGSERCP 70 80 90 100 110 120 120 130 140 150 bh0025 RCSQAVYAAEKVIGAGKVRWLLGMRGMGGDIFLKCGFQNF ::::::::::::::::: : gi|750 RCSQAVYAAEKVIGAGK-SWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 130 140 150 160 170 >>gi|1345932|sp|P47875|CSRP1_RAT Cysteine and glycine-ri (193 aa) initn: 967 init1: 967 opt: 969 Z-score: 1179.5 bits: 224.7 E(): 4.7e-57 Smith-Waterman score: 969; 97.842% identity (97.842% similar) in 139 aa overlap (1-139:2-139) 10 20 30 40 50 bh0025 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 10 20 30 40 50 60 60 70 80 90 100 110 bh0025 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: gi|134 CYGKKYGPKGYGYGQGAGTLSMDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP 70 80 90 100 110 120 120 130 140 150 bh0025 RCSQAVYAAEKVIGAGKVRWLLGMRGMGGDIFLKCGFQNF ::::::::::::::::: : gi|134 RCSQAVYAAEKVIGAGK-SWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 130 140 150 160 170 >>gi|149743847|ref|XP_001494732.1| PREDICTED: similar to (193 aa) initn: 955 init1: 955 opt: 957 Z-score: 1165.0 bits: 222.0 E(): 3e-56 Smith-Waterman score: 957; 96.403% identity (98.561% similar) in 139 aa overlap (1-139:2-139) 10 20 30 40 50 bh0025 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::: gi|149 MPNWGGGKKCGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 10 20 30 40 50 60 60 70 80 90 100 110 bh0025 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|149 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKQEEAPGHRPTTNPNASKFAQKIGGSERCP 70 80 90 100 110 120 120 130 140 150 bh0025 RCSQAVYAAEKVIGAGKVRWLLGMRGMGGDIFLKCGFQNF ::.:::::::::::::: : gi|149 RCTQAVYAAEKVIGAGK-SWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 130 140 150 160 170 >>gi|126306662|ref|XP_001363524.1| PREDICTED: similar to (193 aa) initn: 955 init1: 955 opt: 957 Z-score: 1165.0 bits: 222.0 E(): 3e-56 Smith-Waterman score: 957; 96.403% identity (97.842% similar) in 139 aa overlap (1-139:2-139) 10 20 30 40 50 bh0025 PNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 10 20 30 40 50 60 60 70 80 90 100 110 bh0025 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: :: gi|126 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEETPGHRPTTNPNASKFAQKIGGSESCP 70 80 90 100 110 120 120 130 140 150 bh0025 RCSQAVYAAEKVIGAGKVRWLLGMRGMGGDIFLKCGFQNF ::.:::::::::::::: : gi|126 RCGQAVYAAEKVIGAGK-SWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG 130 140 150 160 170 159 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 04:55:06 2008 done: Thu Aug 7 04:58:02 2008 Total Scan time: 574.640 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]