hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-04580388/chunk_1/iprscan-20080807-04580388.nocrc
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Query sequence: bh00252
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00412.12.fs LIM domain                                      71.7    4.2e-20   2
PF00412.12.ls LIM domain                                      66.7    6.9e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00412.12.fs   1/2       9    66 ..     1    61 []    64.7  4.2e-18
PF00412.12.ls   1/1       9    66 ..     1    61 []    66.7  6.9e-17

Alignments of top-scoring domains:
PF00412.12.fs: domain 1 of 2, from 9 to 66: score 64.7, E = 4.2e-18
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C+ C+k++y +e v +  ++++H +CF C+vC+k+L++++ + ++ +
     bh00252     9    CGVCQKTVYFAEEV-QCEGNSFHKSCFLCMVCKKNLDSTT-VAVHGE 53   

                   sklYCkhDyyklfg<-*
                    ++YCk++y k++g   
     bh00252    54 -EIYCKSCYGKKYG    66   

PF00412.12.ls: domain 1 of 1, from 9 to 66: score 66.7, E = 6.9e-17
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C+ C+k++y +e v +  ++++H +CF C+vC+k+L++++ + ++ +
     bh00252     9    CGVCQKTVYFAEEV-QCEGNSFHKSCFLCMVCKKNLDSTT-VAVHGE 53   

                   sklYCkhDyyklfg<-*
                    ++YCk++y k++g   
     bh00252    54 -EIYCKSCYGKKYG    66   

//