hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-05125301/chunk_1/iprscan-20080807-05125301.nocrc
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Query sequence: bh00352
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00101                                                   3.5    6.2e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00101    1/1      47   180 ..     1   249 []     3.5  6.2e-07

Alignments of top-scoring domains:
SM00101: domain 1 of 1, from 47 to 180: score 3.5, E = 6.2e-07
                   *->ReEnVYmAKLAEQAERYeEMvEfMekvaktvddeqqpkeELtVEERN
                      + E V +AKLAEQAERY+ M+ +M+ v +          EL+ EERN
     bh00352    47    KSELVQKAKLAEQAERYDDMAAAMKAVTEQGH-------ELSNEERN 86   

                   LLSVAYKNviGARRASWRIISSiEqKEeSrgnedhvalikeYRqKiEtEL
                   LLSVAYKNv+GARR SWR+ISSiEqK e   ne +  + keYR+KiE+EL
     bh00352    87 LLSVAYKNVVGARRSSWRVISSIEQKTE--RNEKKQQMGKEYREKIEAEL 134  

                   skICdgILkLLeshLiPsasaaESKVFYlKMKGDYyRYlaEFktgaerKe
                     IC ++L                                          
     bh00352   135 QDICNDVL------------------------------------------ 142  

                   AAentlvaYksAqdiAlaelppTHPIRLGLALNfSVFYYEILNsPdrACn
                                            +R G    f   +    N+  + C 
     bh00352   143 -------------------------VR-GQCFCFEQWFLNSINLMYK-CR 165  

                   LAKqAFDeAIaELDtlgEeSYKDSTLIMQLLrDNLTLWTSDlqddaadei
                   L K                         QL+r            +   +i
     bh00352   166 LSK-------------------------QLMR------------ERCLNI 178  

                   ke<-*
                    e   
     bh00352   179 LE    180  

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