hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-05190549/chunk_1/iprscan-20080807-05190549.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bh00385 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01576.9.fs Myosin tail 1635.4 0 2 PF01576.9.ls Myosin tail 1630.8 0 1 PF00063.11.fs Myosin head (motor domain) 808.5 3.4e-240 1 PF00063.11.ls Myosin head (motor domain) 423.3 3.1e-124 1 PF01920.10.fs Prefoldin subunit 44.3 1.1e-11 9 PF02370.7.ls M protein repeat 40.9 3.9e-09 10 PF02996.8.fs Prefoldin subunit 24.2 2.7e-06 5 PF04508.3.ls Viral A-type inclusion protein repeat 31.1 3.7e-06 11 PF02370.7.fs M protein repeat 26.1 8.8e-06 8 PF00612.17.fs IQ calmodulin-binding motif 22.0 1.8e-05 2 PF06696.2.ls Streptococcal surface antigen repeat 26.4 9.2e-05 10 PF00612.17.ls IQ calmodulin-binding motif 26.0 0.00013 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00063.11.ls 1/1 1 405 [. 1 791 [] 423.3 3.1e-124 PF00063.11.fs 1/1 1 405 [. 293 791 .] 808.5 3.4e-240 PF00612.17.fs 1/2 421 441 .. 1 21 [] 21.1 3.3e-05 PF00612.17.ls 1/2 421 441 .. 1 21 [] 23.1 0.00094 PF01576.9.fs 2/2 707 1565 .. 1 863 [] 1628.9 0 PF01576.9.ls 1/1 707 1565 .. 1 863 [] 1630.8 0 Alignments of top-scoring domains: PF00063.11.ls: domain 1 of 1, from 1 to 405: score 423.3, E = 3.1e-124 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp bh00385 - ----------------------------------------------- - iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA bh00385 - -------------------------------------------------- - GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA bh00385 - -------------------------------------------------- - FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy bh00385 - -------------------------------------------------- - QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc bh00385 - -------------------------------------------------- - ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk ++ Fk bh00385 1 ---------------------------------------------MK-FK 4 qdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrriktG q +eeqA ++++tee + + a L+G+++++L+k+L+++r+k+G bh00385 5 LKQ----REEQA---EPDGTEE-ADKSAYLMGLNSADLLKGLCHPRVKVG 46 gggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsakeQ +e+vtk+qnv+q++ya +ALAKa Y+R+F+W+V++iN +L++k+ bh00385 47 -----NEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQ- 90 asdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaekN ++++fIGvLDI+GFEIF ++N bh00385 91 -----------------------------PRQYFIGVLDIAGFEIF-DFN 110 SFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqaci SFEQLcIN++NEKLQQfFNhhmF+lEQEEYk+EgIeWtfId+g+D+qaci bh00385 111 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACI 160 dLIEkKkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlthFAqk dLIEk P+GI+s+L+EeC+fPkatD+tF +KL++++++k++ +F qk bh00385 161 DLIEK--PMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSA---NF-QK 204 pgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlisllks p r+ kg + +++F++ HYAG V+Yn+ g+l KNkDpL++++++l+++ bh00385 205 P-RNIKG---KPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQK 250 SsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksaklgsgkg Ss +ll++LF + a++ a +gkg bh00385 251 SSL-KLLSTLFANY------------------------AGADAPIEKGKG 275 ksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNekKkag k++k+++f +Tv+++++e l++Lm++L+st +PHfvRCI+PNe K +g bh00385 276 KAKKGSSF-QTVSALHRENLNKLMTNLRST---HPHFVRCIIPNETKSPG 321 qFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLapktwp ++D++lV+hQlrc+GvLE giRi+r+GFPnRi++++F+qRYr+L+p ++p bh00385 322 VMDNPLVMHQLRCNGVLE-GIRICRKGFPNRILYGDFRQRYRILNPAAIP 370 sgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<-* +g + d++kg+e++L sl ++D+++y+fG+TK+Ff+ bh00385 371 EG----QFIDSRKGAEKLLSSL-----DIDHNQYKFGHTKVFFK 405 PF00063.11.fs: domain 1 of 1, from 1 to 405: score 808.5, E = 3.4e-240 *->ieGFkqdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaL ++ Fk q +eeqA ++++tee + + a L+G+++++L+k+L bh00385 1 MK-FKLKQ----REEQA---EPDGTEE-ADKSAYLMGLNSADLLKGL 38 lsrriktGgggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiN +++r+k+G +e+vtk+qnv+q++ya +ALAKa Y+R+F+W+V++iN bh00385 39 CHPRVKVG-----NEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRIN 83 kaLsakeQasdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyG +L++k+ ++++fIGvLDI+G bh00385 84 ATLETKQ------------------------------PRQYFIGVLDIAG 103 FEIFaekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdy FEIF ++NSFEQLcIN++NEKLQQfFNhhmF+lEQEEYk+EgIeWtfId+ bh00385 104 FEIF-DFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDF 152 glDnqacidLIEkKkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhp g+D+qacidLIEk P+GI+s+L+EeC+fPkatD+tF +KL++++++k++ bh00385 153 GMDLQACIDLIEK--PMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSA 200 rlthFAqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfd +F qkp r+ kg + +++F++ HYAG V+Yn+ g+l KNkDpL++ bh00385 201 ---NF-QKP-RNIKG---KPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNE 242 dlisllksSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaks ++++l+++Ss +ll++LF + a++ bh00385 243 TVVGLYQKSSL-KLLSTLFANY------------------------AGAD 267 aklgsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIK a +gkgk++k+++f +Tv+++++e l++Lm++L+st +PHfvRCI+ bh00385 268 APIEKGKGKAKKGSSF-QTVSALHRENLNKLMTNLRST---HPHFVRCII 313 PNekKkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYr PNe K +g++D++lV+hQlrc+GvLE giRi+r+GFPnRi++++F+qRYr bh00385 314 PNETKSPGVMDNPLVMHQLRCNGVLE-GIRICRKGFPNRILYGDFRQRYR 362 lLapktwpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiF +L+p ++p+g + d++kg+e++L sl ++D+++y+fG+TK+F bh00385 363 ILNPAAIPEG----QFIDSRKGAEKLLSSL-----DIDHNQYKFGHTKVF 403 fR<-* f+ bh00385 404 FK 405 PF00612.17.fs: domain 1 of 2, from 421 to 441: score 21.1, E = 3.3e-05 *->rraaikIQaawRGylaRkryk<-* r +++IQa+ RG laR +yk bh00385 421 SRIITRIQAQSRGVLARMEYK 441 PF00612.17.ls: domain 1 of 2, from 421 to 441: score 23.1, E = 0.00094 *->rraaikIQaawRGylaRkryk<-* r +++IQa+ RG laR +yk bh00385 421 SRIITRIQAQSRGVLARMEYK 441 PF01576.9.fs: domain 2 of 2, from 707 to 1565: score 1628.9, E = 0 *->dlerqkreleeqlkrkeselsqlslklEdEqalvaqLqkkikeleaR dle++k++l e lk+k++el++l++++EdEqal +qLqkk+kel+aR bh00385 707 DLENDKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQAR 753 IeELeEeLEaERaARaKaEkqRaDLsrELEeLsERLeEagGaTaaQiEln IeELeEeLEaER+ARaK+Ek R+DLsrELEe+sERLeEagGaT+ QiE+n bh00385 754 IEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMN 803 kKREaELaKLRrdLEEanlqhEealatLRKKHqdainElsdQieqLqKqK kKREaE++K+RrdLEEa+lqhE++ a+LRKKH+d+++El++Qi++Lq++K bh00385 804 KKREAEFQKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVK 853 akaEKeKsqlqaEvddlaaqldqiaKaKlnaEKkakqlEsqlsElqvKld +k+EKeKs++++E+dd++++++qi KaK+n EK+ ++lE+q++E ++K++ bh00385 854 QKLEKEKSEFKLELDDVTSNMEQIIKAKANLEKMCRTLEDQMNEHRSKAE 903 ElqRqlnDltsqKsRLqsENsdLtrqleEaEaqvsqlsklKsqlesQLEe E+qR++nDltsq+++Lq+EN++L rql E+Ea++sql++ K+ +++QLE+ bh00385 904 ETQRSVNDLTSQRAKLQTENGELSRQLDEKEALISQLTRGKLTYTQQLED 953 AkRslEEEsReRanLqaqlrnlehDlDslrEqlEEEsEAKaeleRqLsKa +kR+lEEE +++++L++ l++ +hD+D lrEq+EEE+EAKael+R LsKa bh00385 954 LKRQLEEEVKAKNALAHALQSARHDCDLLREQYEEETEAKAELQRVLSKA 1003 naeiqqwrsKfEsEgalraEElEElKkKlnqkisElEeaaEaanaKcssL n+e++qwr+K+E+++++r+EElEE+KkKl+q+++E+Eea+Ea+naKcssL bh00385 1004 NSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQEAEEAVEAVNAKCSSL 1053 EKtKsRLqsElEDlqievEranaaaseLEKKqknFDKilaEwKkkvdelq EKtK+RLq+E+EDl+++vEr+naaa++L+KKq+nFDKilaEwK+k++e+q bh00385 1054 EKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQ 1103 aEletAqreaRnlstElfrlKneleElkDqvEaLrRENKnLqdEikDLtd +Ele +q+eaR+lstElf+lKn++eE+++++E+++RENKnLq+Ei DLt+ bh00385 1104 SELESSQKEARSLSTELFKLKNAYEESLEHLETFKRENKNLQEEISDLTE 1153 qLgEgGRnvHELEKarRrLEaEkdELqaALeEAEaALeqeEsKvlRaqvE qLg G+ +HELEK+r++LEaEk ELq+ALeEAEa Le+eE K+lRaq+E bh00385 1154 QLGSSGKTIHELEKVRKQLEAEKMELQSALEEAEASLEHEEGKILRAQLE 1203 lsqiRsEiERRLaEKEEEfEntRKnhqraiesLqasLaEaEaKgKaEalR ++qi++EiER+LaEK+EE+E+ ++nh r ++sLq+sL +aE+++++EalR bh00385 1204 FNQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSL-DAETRSRNEALR 1252 lKKKLEgdInELEiaLDhaNkanaeaqKnvKkyqqqvkeLQtqvEeeQRa +KKK+Egd+nE+Ei+L haN+++aeaqK+vK +q +k+ Q q++++ Ra bh00385 1253 VKKKMEGDLNEMEIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRA 1302 redareqlavaERRataLqaElEELrvaLeqaeRaRKqAEtElaEaserv ++d++e++a++ERR+++LqaElEELr+ +eq+eR+RK AE+El E+serv bh00385 1303 NDDLKENIAIVERRNNLLQAELEELRAVVEQTERSRKLAEQELIETSERV 1352 neLtaqnssLiaqKRKLEgelaalqsDLDEavnElkaAeERakKAqaDaa + L++qn+sLi+qK+K++++l++lq +++Eav+E+++AeE+akKA++Daa bh00385 1353 QLLHSQNTSLINQKKKMDADLSQLQTEVEEAVQECRNAEEKAKKAITDAA 1402 rLaeELrqEQehsqklErlRKqLEsqvKeLqvRLdEaEaaAlkgGKkvIq ++aeEL++EQ++s +lEr++K++E+++K+Lq+RLdEaE++AlkgGKk+ q bh00385 1403 MMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQ 1452 KLEaRVReLEaELdgEqRRhaetqKnlRKaeRrvKELqfQvEEDkKnler KLEaRVReLE+EL++Eq+R+ae++K +RK+eRr+KEL++Q+EED+Knl+r bh00385 1453 KLEARVRELENELEAEQKRNAESVKGMRKSERRIKELTYQTEEDRKNLLR 1502 lQDLvDKLqaKiKtyKRQlEEaEEiaqinlsKyRkaQreLEdAEERADqA lQDLvDKLq K+K+yKRQ EEaEE+a++nlsK+Rk+Q+eL++AEERAD+A bh00385 1503 LQDLVDKLQLKVKAYKRQAEEAEEQANTNLSKFRKVQHELDEAEERADIA 1552 EsslnklRqreaKsRr<-* Es++nklR aKsR+ bh00385 1553 ESQVNKLR---AKSRD 1565 PF01576.9.ls: domain 1 of 1, from 707 to 1565: score 1630.8, E = 0 *->dlerqkreleeqlkrkeselsqlslklEdEqalvaqLqkkikeleaR dle++k++l e lk+k++el++l++++EdEqal +qLqkk+kel+aR bh00385 707 DLENDKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQAR 753 IeELeEeLEaERaARaKaEkqRaDLsrELEeLsERLeEagGaTaaQiEln IeELeEeLEaER+ARaK+Ek R+DLsrELEe+sERLeEagGaT+ QiE+n bh00385 754 IEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMN 803 kKREaELaKLRrdLEEanlqhEealatLRKKHqdainElsdQieqLqKqK kKREaE++K+RrdLEEa+lqhE++ a+LRKKH+d+++El++Qi++Lq++K bh00385 804 KKREAEFQKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVK 853 akaEKeKsqlqaEvddlaaqldqiaKaKlnaEKkakqlEsqlsElqvKld +k+EKeKs++++E+dd++++++qi KaK+n EK+ ++lE+q++E ++K++ bh00385 854 QKLEKEKSEFKLELDDVTSNMEQIIKAKANLEKMCRTLEDQMNEHRSKAE 903 ElqRqlnDltsqKsRLqsENsdLtrqleEaEaqvsqlsklKsqlesQLEe E+qR++nDltsq+++Lq+EN++L rql E+Ea++sql++ K+ +++QLE+ bh00385 904 ETQRSVNDLTSQRAKLQTENGELSRQLDEKEALISQLTRGKLTYTQQLED 953 AkRslEEEsReRanLqaqlrnlehDlDslrEqlEEEsEAKaeleRqLsKa +kR+lEEE +++++L++ l++ +hD+D lrEq+EEE+EAKael+R LsKa bh00385 954 LKRQLEEEVKAKNALAHALQSARHDCDLLREQYEEETEAKAELQRVLSKA 1003 naeiqqwrsKfEsEgalraEElEElKkKlnqkisElEeaaEaanaKcssL n+e++qwr+K+E+++++r+EElEE+KkKl+q+++E+Eea+Ea+naKcssL bh00385 1004 NSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQEAEEAVEAVNAKCSSL 1053 EKtKsRLqsElEDlqievEranaaaseLEKKqknFDKilaEwKkkvdelq EKtK+RLq+E+EDl+++vEr+naaa++L+KKq+nFDKilaEwK+k++e+q bh00385 1054 EKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQ 1103 aEletAqreaRnlstElfrlKneleElkDqvEaLrRENKnLqdEikDLtd +Ele +q+eaR+lstElf+lKn++eE+++++E+++RENKnLq+Ei DLt+ bh00385 1104 SELESSQKEARSLSTELFKLKNAYEESLEHLETFKRENKNLQEEISDLTE 1153 qLgEgGRnvHELEKarRrLEaEkdELqaALeEAEaALeqeEsKvlRaqvE qLg G+ +HELEK+r++LEaEk ELq+ALeEAEa Le+eE K+lRaq+E bh00385 1154 QLGSSGKTIHELEKVRKQLEAEKMELQSALEEAEASLEHEEGKILRAQLE 1203 lsqiRsEiERRLaEKEEEfEntRKnhqraiesLqasLaEaEaKgKaEalR ++qi++EiER+LaEK+EE+E+ ++nh r ++sLq+sL +aE+++++EalR bh00385 1204 FNQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSL-DAETRSRNEALR 1252 lKKKLEgdInELEiaLDhaNkanaeaqKnvKkyqqqvkeLQtqvEeeQRa +KKK+Egd+nE+Ei+L haN+++aeaqK+vK +q +k+ Q q++++ Ra bh00385 1253 VKKKMEGDLNEMEIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRA 1302 redareqlavaERRataLqaElEELrvaLeqaeRaRKqAEtElaEaserv ++d++e++a++ERR+++LqaElEELr+ +eq+eR+RK AE+El E+serv bh00385 1303 NDDLKENIAIVERRNNLLQAELEELRAVVEQTERSRKLAEQELIETSERV 1352 neLtaqnssLiaqKRKLEgelaalqsDLDEavnElkaAeERakKAqaDaa + L++qn+sLi+qK+K++++l++lq +++Eav+E+++AeE+akKA++Daa bh00385 1353 QLLHSQNTSLINQKKKMDADLSQLQTEVEEAVQECRNAEEKAKKAITDAA 1402 rLaeELrqEQehsqklErlRKqLEsqvKeLqvRLdEaEaaAlkgGKkvIq ++aeEL++EQ++s +lEr++K++E+++K+Lq+RLdEaE++AlkgGKk+ q bh00385 1403 MMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQ 1452 KLEaRVReLEaELdgEqRRhaetqKnlRKaeRrvKELqfQvEEDkKnler KLEaRVReLE+EL++Eq+R+ae++K +RK+eRr+KEL++Q+EED+Knl+r bh00385 1453 KLEARVRELENELEAEQKRNAESVKGMRKSERRIKELTYQTEEDRKNLLR 1502 lQDLvDKLqaKiKtyKRQlEEaEEiaqinlsKyRkaQreLEdAEERADqA lQDLvDKLq K+K+yKRQ EEaEE+a++nlsK+Rk+Q+eL++AEERAD+A bh00385 1503 LQDLVDKLQLKVKAYKRQAEEAEEQANTNLSKFRKVQHELDEAEERADIA 1552 EsslnklRqreaKsRr<-* Es++nklR aKsR+ bh00385 1553 ESQVNKLR---AKSRD 1565 //