hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-05190549/chunk_1/iprscan-20080807-05190549.nocrc
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Query sequence: bh00385
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00242                                                 408.8   3.1e-118   1
SM00015                                                  26.6     0.0035   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00242    1/1       1   418 [.     1   771 []   408.8 3.1e-118
SM00015    1/1     419   441 ..     1    23 []    26.6   0.0035

Alignments of top-scoring domains:
SM00242: domain 1 of 1, from 1 to 418: score 408.8, E = 3.1e-118
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                                                                     
     bh00385     -    ----------------------------------------------- -    

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                        +            +                               
     bh00385     1 -----M------------K------------------------------- 2    

                   keNQsIiISGESGAGKTEatKkimqYLAavsgsvesvedqiLesNPiLEA
                                                                     
     bh00385     - -------------------------------------------------- -    

                   FGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQakg
                                                                     
     bh00385     - -------------------------------------------------- -    

                   ERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfankrys
                                        ++L+             q           
     bh00385     3 ---------------------FKLK-------------Q----------- 7    

                   sgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAILHLG
                                   +                                 
     bh00385     8 ----------------R--------------------------------- 8    

                   NieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtkRki
                              +++a+    ++++ee++k A+L+g+++++L+k L+++++
     bh00385     9 -----------EEQAE----PDGTEEADKSAYLMGLNSADLLKGLCHPRV 43   

                   ktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl....
                   k+g+e   ++tk +nv+q++ya +ALAKa+Y+R+F+W+V rIN +l++++
     bh00385    44 KVGNE---YVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLetkq 90   

                   .sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvFKlEQEEY
                   +++yfIGVLDI+GFEiF++NSFEQ+CIN++NEKLQQfFn+h+F+lEQEEY
     bh00385    91 pRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEY 140  

                   erEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeClfHAqPkg
                   ++EGIeWtfIdF++ D+Q+ciDLIEk+    +GI+s+L+EeC+f   Pk+
     bh00385   141 KKEGIEWTFIDFGM-DLQACIDLIEKP----MGIMSILEEECMF---PKA 182  

                   TDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrtaFiikHY
                   TD+tF +KL     ++h++k+ +f+kp       +++k +++++F++ HY
     bh00385   183 TDMTFKAKL----FDNHLGKSANFQKP-------RNIKGKPEAHFSLIHY 221  

                   AGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFpeeadqsssaa
                   AG V+Yn+ G+L KNkD+L+e ++ L q+S+ +l+ +LF  +a++++  +
     bh00385   222 AGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGADAPIE 271  

                   kekss.ggagksrkagrrepskgtisskkrppTvGsqFk.sLneLmetLn
                   k+k++ ++                   + +++Tv++++++ Ln+Lm++L+
     bh00385   272 KGKGKaKK-------------------GSSFQTVSALHReNLNKLMTNLR 302  

                   stnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRraGFPyRl
                   st+PHF+RCI+PNe+K pgv+d++lV+hQLr++GvLE+iRI+r+GFP+R+
     bh00385   303 STHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRI 352  

                   pfdeFlqRYkvLlpktwppwggewknrlfgdakkacealLqslglgiegd
                    + +F+qRY++L p  +p ++       f d +k++e+lL sl       
     bh00385   353 LYGDFRQRYRILNPAAIPEGQ-------FIDSRKGAEKLLSSLD------ 389  

                   nldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                    +d+++y++G+TKvF++ +g l++LEe+R+e   
     bh00385   390 -IDHNQYKFGHTKVFFK-AGLLGLLEEMRDE    418  

SM00015: domain 1 of 1, from 419 to 441: score 26.6, E = 0.0035
                   *->rleraAiiIQaawRGylaRkryk<-*
                      rl r++++IQa  RG laR +yk   
     bh00385   419    RLSRIITRIQAQSRGVLARMEYK    441  

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