hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-05354877/chunk_1/iprscan-20080807-05354877.nocrc
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Query sequence: bj00123
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00195                                                  28.2    5.6e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00195    1/1       1   136 []     1   172 []    28.2  5.6e-05

Alignments of top-scoring domains:
SM00195: domain 1 of 1, from 1 to 136: score 28.2, E = 5.6e-05
                   *->gpseilphlYLGsysdaseanlallkklgIthviNvteevpnnfelk
                               Y+G++s+a+  + ++l+klgIthv+N++e+++      
     bj00123     1    ---------YVGNASVAQ--DIPKLQKLGITHVLNAAEGRS------ 30   

                   kkndryy.tneyiskgsgftylqiPnvdDIyyhiawntetkiskyleeav
                      +++++tn++++k+sg+tyl+i   +D       ++e ++s+y+e+a+
     bj00123    31 ---FMHVnTNANFYKDSGITYLGIK-AND-------TQEFNLSAYFERAA 69   

                   efIeda..............ekkggkVLVHCqA...GvSRSAtlviAYLM
                   +fI++a  +++++ +   ++ k++g +L H  ++ +G S S++       
     bj00123    70 DFIDQAlaqkndgvslllprLKSNGAILAHRNLrlpGSSDSPA------- 112  

                   ktrnlslrdAydfvyvYhikerRcpiisPNfgFlrQLieyerk<-*
                   +   lsl++++d+        +R p  +P            r    
     bj00123   113 SASRLSLPSSWDYR-----PGAR-P--LPG-----------RL    136  

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