hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-20164575/chunk_1/iprscan-20090617-20164575.nocrc
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Query sequence: bj00162
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02376.6.ls CUT domain                                     316.4    4.7e-92   2
PF02376.6.fs CUT domain                                     312.4    7.4e-91   2
PF00046.19.ls Homeobox domain                                 24.3    1.3e-05   1
PF00046.19.fs Homeobox domain                                 22.3    0.00012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02376.6.fs   1/2     364   450 ..     1    88 []   158.4  6.2e-45
PF02376.6.ls   1/2     364   450 ..     1    88 []   160.4  4.2e-45
PF02376.6.fs   2/2     486   573 ..     1    88 []   154.0  1.2e-43
PF02376.6.ls   2/2     486   573 ..     1    88 []   156.0  9.2e-44
PF00046.19.fs   1/1     679   736 ..     1    57 []    22.3  0.00012
PF00046.19.ls   1/1     679   736 ..     1    57 []    24.3  1.3e-05

Alignments of top-scoring domains:
PF02376.6.fs: domain 1 of 2, from 364 to 450: score 158.4, E = 6.2e-45
                   *->nqqvgmneeldTaeIarrVkeeLkranIsQrlFAekvLGlSQGslSd
                      +qqv++n+ ++++eI+++V++eLkra+IsQ++FA+++++++QG+lS+
     bj00162   364    EQQVSTNT-EVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSE 409  

                   LLrrPKPWskltqkGRepFrrMqnWLqdpnavrdliyqqek<-*
                   +Lr+++++++++q++++++r+Mqn+Lq+p+a+rd+iyq+e+   
     bj00162   410 ILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERDRIYQDER    450  

PF02376.6.ls: domain 1 of 2, from 364 to 450: score 160.4, E = 4.2e-45
                   *->nqqvgmneeldTaeIarrVkeeLkranIsQrlFAekvLGlSQGslSd
                      +qqv++n+ ++++eI+++V++eLkra+IsQ++FA+++++++QG+lS+
     bj00162   364    EQQVSTNT-EVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSE 409  

                   LLrrPKPWskltqkGRepFrrMqnWLqdpnavrdliyqqek<-*
                   +Lr+++++++++q++++++r+Mqn+Lq+p+a+rd+iyq+e+   
     bj00162   410 ILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERDRIYQDER    450  

PF02376.6.fs: domain 2 of 2, from 486 to 573: score 154.0, E = 1.2e-43
                   *->nqqvgmneeldTaeIarrVkeeLkranIsQrlFAekvLGlSQGslSd
                      n+++++n+++++a+I++++++e+kra++sQ+lFA++++++SQG+l++
     bj00162   486    NGKPENNTMNINASIYDEIQQEMKRAKVSQALFAKVAATKSQGWLCE 532  

                   LLrrPKPWskltqkGRepFrrMqnWLqdpnavrdliyqqek<-*
                   LLr+++++s+++++++e++++++++L++p+++rd+iy+qe+   
     bj00162   533 LLRWKEDPSPENRTLWENLSMIRRFLSLPQPERDAIYEQES    573  

PF02376.6.ls: domain 2 of 2, from 486 to 573: score 156.0, E = 9.2e-44
                   *->nqqvgmneeldTaeIarrVkeeLkranIsQrlFAekvLGlSQGslSd
                      n+++++n+++++a+I++++++e+kra++sQ+lFA++++++SQG+l++
     bj00162   486    NGKPENNTMNINASIYDEIQQEMKRAKVSQALFAKVAATKSQGWLCE 532  

                   LLrrPKPWskltqkGRepFrrMqnWLqdpnavrdliyqqek<-*
                   LLr+++++s+++++++e++++++++L++p+++rd+iy+qe+   
     bj00162   533 LLRWKEDPSPENRTLWENLSMIRRFLSLPQPERDAIYEQES    573  

PF00046.19.fs: domain 1 of 1, from 679 to 736: score 22.3, E = 0.00012
                   *->rrkRTtftpeQleeLEkeFqk.nrYPsreeReeLAkkLgLterqVkv
                       r+RT ++ e l +L+ + q    YP+ e+++ L+++L+L++  +  
     bj00162   679    TRPRTKISVEALGILQSFIQDvGLYPDEEAIQTLSAQLDLPKYTIIK 725  

                   WFQNRRaKwKk<-*
                    FQN R+  K    
     bj00162   726 FFQNQRYYLKH    736  

PF00046.19.ls: domain 1 of 1, from 679 to 736: score 24.3, E = 1.3e-05
                   *->rrkRTtftpeQleeLEkeFqk.nrYPsreeReeLAkkLgLterqVkv
                       r+RT ++ e l +L+ + q    YP+ e+++ L+++L+L++  +  
     bj00162   679    TRPRTKISVEALGILQSFIQDvGLYPDEEAIQTLSAQLDLPKYTIIK 725  

                   WFQNRRaKwKk<-*
                    FQN R+  K    
     bj00162   726 FFQNQRYYLKH    736  

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