hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-05505765/chunk_1/iprscan-20080807-05505765.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bj00195y2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00382 25.3 0.0087 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00382 1/3 1738 1884 .. 1 92 [] 19.2 0.28 SM00382 2/3 2025 2181 .. 1 92 [] 1.7 16 SM00382 3/3 2337 2485 .. 1 92 [] 4.4 8.3 Alignments of top-scoring domains: SM00382: domain 1 of 3, from 1738 to 1884: score 19.2, E = 0.28 *->pgevvllvGppGsGKTTlaralarllgpgviyidge...ggqrirla g+++ Gp G+GKT ++al +llg+ v++++++++ ++ + + bj00195y2 1738 GGNPY---GPAGTGKTESVKALGGLLGRQVLVFNCDegiDVKSMGRI 1781 lalark..dvlllDEitslld............................. + + k + +DE ++l + ++ + + + ++ +++++ +++++ bj00195y2 1782 FVGLVKcgAWGCFDEFNRLEEsvlsavsmqiqtiqdalknhrtvcellgk 1831 .......vtviattn.................dldpallrrrfdrrivll + + +++ +++t+n+ +++ +++++ +++ + l + ++ + d +++ + bj00195y2 1832 evevnsnSGIFITMNpagkgyggrqklpdnlkQLFRPVAMSHPDNELIAE 1881 ril<-* il bj00195y2 1882 VIL 1884 SM00382: domain 2 of 3, from 2025 to 2181: score 1.7, E = 16 *->pgevvllvGppGsGKTTlaralarllgp......gviyidge..... + v +vGp+G+GK+Tl r+l r + +++++ + + ++ + bj00195y2 2025 QRMGVVIVGPSGAGKSTLWRML-RAALCktgkvvKQYTMNPKampry 2070 ..............ggqrirlalalark..............dvlllDEi + ++ + + ++ + g a++ +r++++ ++ +++ d ++ + bj00195y2 2071 qllghidmdtrewsDGVLTNSARQVVREpqdvsswiicdgdiDPEWIESL 2120 tslld..................vtviattn........dldpallrrrf +s ld+++++ ++++ + + +v +++ t++ + ++ ++ ++ +++ + bj00195y2 2121 NSVLDdnrlltmpsgeriqfgpnVNFVFETHdlscaspaTISRMGMIFLS 2170 drrivl.lril<-* d++ +l+ +i bj00195y2 2171 DEETDLnSLIK 2181 SM00382: domain 3 of 3, from 2337 to 2485: score 4.4, E = 8.3 *->pgevvllvGppGsGKTTlaralarllgp.gviyidge.......... ++++ +lvGp G+GK l+r +l + + + ++ + +++ + bj00195y2 2337 TKQPFILVGPEGCGKGMLLRYAFSQLRStQIATVHCSaqttsrhllq 2383 ....ggqrirlalalark......dvlllDEitslld............. + ++ + i ++ ++++ + vl l +i+ ++ + + + ++ bj00195y2 2384 klsqTCMVISTNTGRVYRpkdcerLVLYLKDINLPKLdkwgtstlvaflq 2433 ....................vtviattn...dldpallrrrfdrrivllr + + ++ +++++ ++++++++a + ++ l+++ l rf+ ++ l bj00195y2 2434 qvltyqgfydenlewvglenIQIVASMSaggRLGRHKLTTRFTSIVRLCS 2483 il<-* i+ bj00195y2 2484 ID 2485 //