hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-06093172/chunk_1/iprscan-20080807-06093172.nocrc
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Query sequence: bj00338
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00194                                                 904.8   1.5e-267   2
SM00404                                                 320.0    1.6e-91   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00194    1/2      89   352 ..     1   308 []   450.9 6.5e-131
SM00404    1/2     248   349 ..     1    92 []   160.7  1.5e-43
SM00194    2/2     381   642 ..     1   308 []   453.9 8.3e-132
SM00404    2/2     537   639 ..     1    92 []   159.3  3.8e-43

Alignments of top-scoring domains:
SM00194: domain 1 of 2, from 89 to 352: score 450.9, E = 6.5e-131
                   *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi
                       ++eEf+ l++  ++          +c+ a ++eN+  eKNRY  +i
     bj00338    89    LFREEFNALPACPIQA---------TCEAASKEENK--EKNRYV-NI 123  

                   lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT
                   lpyDh+RV+L+p +g     ++sDYINA++i+gy e++++Ia+QGP+++T
     bj00338   124 LPYDHSRVHLTPVEGV----PDSDYINASFINGYQEKNKFIAAQGPKEET 169  

                   veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee.slty
                   v+DFWrM+weq++++IVM tnl E+        +  KCaqYWP+ +++ty
     bj00338   170 VNDFWRMIWEQNTATIVMVTNLKER--------KECKCAQYWPDQgCWTY 211  

                   GditVtlvseeklpddytiRtlevtntgtekkdlk.aksetrtVthyhyt
                   G+i+V  +++++l  dyt+R+++++  g+     ++  +  r +t++h+t
     bj00338   212 GNIRVSVEDVTVLV-DYTVRKFCIQQVGD-----MtNRKPQRLITQFHFT 255  

                   nWPDhgvPespkslldfvrlvrksqssspnssenivssnskyagtspsgP
                   +WPD+gvP +p ++l+f+++v+++++++                   +g 
     bj00338   256 SWPDFGVPFTPIGMLKFLKKVKACNPQY-------------------AGA 286  

                   ivVHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQT
                   ivVHCSAGvGRTGTF++id++l++++++++vd+++ V+++R qR++mVQT
     bj00338   287 IVVHCSAGVGRTGTFVVIDAMLDMMHTerkVDVYGFVSRIRAQRCQMVQT 336  

                   eeQYiFlyraileylk<-*
                   ++QY+F+y+a+le ++   
     bj00338   337 DMQYVFIYQALLEHYL    352  

SM00404: domain 1 of 2, from 248 to 349: score 160.7, E = 1.5e-43
                   *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk.......PivV
                       ++++h+t+WpD+     gvP ++ ++l+fl++v++ +++  + ivV
     bj00338   248    LITQFHFTSWPDF-----GVPFtpIGMLKFLKKVKAcnpqyagAIVV 289  

                   HCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqteeQ
                   HCSAGvGRTGtfv+id +l++ +++++vd++++v ++R qR++mvqt++Q
     bj00338   290 HCSAGVGRTGTFVVIDAMLDMmhterkVDVYGFVSRIRAQRCQMVQTDMQ 339  

                   YlFlyralle<-*
                   Y+F+y+alle   
     bj00338   340 YVFIYQALLE    349  

SM00194: domain 2 of 2, from 381 to 642: score 453.9, E = 8.3e-132
                   *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi
                      gleeEf++l + ++++        ++++++nlp+N+  +KNR    i
     bj00338   381    GLEEEFKKLTSIKIQN--------DKMRTGNLPANM--KKNRVL-QI 416  

                   lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT
                   +py+ +RV+++ + ge    e++DY+NA++idgy+++ +yIa QGPL +T
     bj00338   417 IPYEFNRVIIPVKRGE----ENTDYVNASFIDGYRQKDSYIASQGPLLHT 462  

                   veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee.slty
                   +eDFWrM+we k+++IVMLt+l+E+        g+eKCaqYWP+++ + y
     bj00338   463 IEDFWRMIWEWKSCSIVMLTELEER--------GQEKCAQYWPSDgLVSY 504  

                   GditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytn
                   GditV+l++ee ++ +yt+R+l vtnt +        +++r+++++h+++
     bj00338   505 GDITVELKKEEECE-SYTVRDLLVTNTRE--------NKSRQIRQFHFHG 545  

                   WPDhgvPespkslldfvrlvrksqssspnssenivssnskyagtspsgPi
                   WP+ g+P++ k++++++ +v k+q++s+n                   Pi
     bj00338   546 WPEVGIPSDGKGMISIIAAVQKQQQQSGN------------------HPI 577  

                   vVHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQTe
                    VHCSAG+GRTGTF+a++++l++++a++ +d+f++Vk+lR qRp+mVQT+
     bj00338   578 TVHCSAGAGRTGTFCALSTVLERVKAegiLDVFQTVKSLRLQRPHMVQTL 627  

                   eQYiFlyraileylk<-*
                   eQY F+y++++ey+    
     bj00338   628 EQYEFCYKVVQEYID    642  

SM00404: domain 2 of 2, from 537 to 639: score 159.3, E = 3.8e-43
                   *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk........Piv
                      +++++h++gWp+      g+P+++++++++++av+k++++++++Pi 
     bj00338   537    QIRQFHFHGWPEV-----GIPSdgKGMISIIAAVQKqqqqsgnhPIT 578  

                   VHCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqtee
                   VHCSAG+GRTGtf+a++++l++ + ++ +d+f+tvk+lR qRp+mvqt+e
     bj00338   579 VHCSAGAGRTGTFCALSTVLERvkaegiLDVFQTVKSLRLQRPHMVQTLE 628  

                   QYlFlyralle<-*
                   QY F+y++++e   
     bj00338   629 QYEFCYKVVQE    639  

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