# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obj00350.fasta.nr -Q bj00350.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bj00350, 321 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6820398 sequences Expectation_n fit: rho(ln(x))= 4.8520+/-0.000188; mu= 11.5501+/- 0.011 mean_var=74.8204+/-14.313, 0's: 39 Z-trim: 56 B-trim: 2746 in 1/69 Lambda= 0.148274 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089110|dbj|BAD92999.1| tumor necrosis factor ( 321) 2273 495.3 5.8e-138 gi|19924309|sp|Q9Y6Q6|TNR11_HUMAN Tumor necrosis f ( 616) 1502 330.6 4.1e-88 gi|114673399|ref|XP_523949.2| PREDICTED: tumor nec ( 617) 1497 329.5 8.6e-88 gi|17512456|gb|AAH19185.1| Tnfrsf11a protein [Mus ( 625) 1238 274.1 4.2e-71 gi|17380323|sp|O35305|TNR11_MOUSE Tumor necrosis f ( 625) 1238 274.1 4.2e-71 gi|109497747|ref|XP_573424.2| PREDICTED: similar t ( 633) 1201 266.2 1e-68 gi|149721219|ref|XP_001490340.1| PREDICTED: simila ( 614) 1169 259.4 1.1e-66 gi|73945884|ref|XP_541077.2| PREDICTED: similar to ( 629) 1155 256.4 9.2e-66 gi|148707924|gb|EDL39871.1| tumor necrosis factor ( 602) 1146 254.4 3.4e-65 gi|76669993|ref|XP_609364.2| PREDICTED: similar to ( 673) 1007 224.7 3.3e-56 gi|149601478|ref|XP_001514545.1| PREDICTED: simila ( 485) 936 209.4 9.7e-52 gi|118086501|ref|XP_001233219.1| PREDICTED: simila ( 655) 924 207.0 7.1e-51 gi|126321170|ref|XP_001375833.1| PREDICTED: simila ( 670) 910 204.0 5.8e-50 gi|134025676|gb|AAI36134.1| Tnfrsf11a protein [Xen ( 204) 730 165.0 9.6e-39 gi|119596169|gb|EAW75763.1| CD40 antigen (TNF rece ( 191) 539 124.1 1.8e-26 gi|116256094|sp|Q3LRP1.1|TNR5_CALJA Tumor necrosis ( 274) 540 124.5 2e-26 gi|28569612|gb|AAO43990.1| tumor necrosis factor r ( 223) 537 123.7 2.7e-26 gi|116000|sp|P25942.1|TNR5_HUMAN Tumor necrosis fa ( 277) 537 123.8 3.2e-26 gi|62897351|dbj|BAD96616.1| tumor necrosis factor ( 277) 537 123.8 3.2e-26 gi|61370310|gb|AAX43474.1| tumor necrosis factor r ( 278) 537 123.8 3.2e-26 gi|109091725|ref|XP_001104333.1| PREDICTED: CD40 a ( 278) 535 123.4 4.3e-26 gi|75054191|sp|Q8SQ34.1|TNR5_PIG Tumor necrosis fa ( 278) 531 122.6 7.8e-26 gi|116256095|sp|Q3ZTK5.1|TNR5_HORSE Tumor necrosis ( 280) 528 121.9 1.2e-25 gi|12054064|emb|CAC20218.1| human CD40-homologue [ ( 276) 514 118.9 9.6e-25 gi|148674496|gb|EDL06443.1| CD40 antigen, isoform ( 260) 508 117.6 2.3e-24 gi|13016736|emb|CAC29430.1| CD40 type V isoform [M ( 260) 505 117.0 3.5e-24 gi|22137743|gb|AAH29254.1| Cd40 protein [Mus muscu ( 289) 504 116.8 4.4e-24 gi|13016734|emb|CAC29429.1| CD40 type IV isoform [ ( 222) 500 115.8 6.6e-24 gi|13016732|emb|CAC29428.1| CD40 type III isoform ( 234) 500 115.9 6.8e-24 gi|74189720|dbj|BAE36843.1| unnamed protein produc ( 289) 500 115.9 8e-24 gi|172046819|sp|P27512.3|TNR5_MOUSE Tumor necrosis ( 289) 500 115.9 8e-24 gi|74220508|dbj|BAE31471.1| unnamed protein produc ( 289) 500 115.9 8e-24 gi|192526|gb|AAA37404.1| T-cell differentiation an ( 289) 500 115.9 8e-24 gi|74181437|dbj|BAE29991.1| unnamed protein produc ( 289) 500 115.9 8e-24 gi|74220437|dbj|BAE31440.1| unnamed protein produc ( 289) 497 115.3 1.2e-23 gi|149042896|gb|EDL96470.1| tumor necrosis factor ( 260) 493 114.4 2.1e-23 gi|183238844|gb|ACC60993.1| CD40 molecule [Marmota ( 280) 493 114.4 2.2e-23 gi|149042899|gb|EDL96473.1| tumor necrosis factor ( 194) 489 113.4 3e-23 gi|149042897|gb|EDL96471.1| tumor necrosis factor ( 234) 484 112.4 7.3e-23 gi|13016699|emb|CAC29424.1| CD40 type II isoform [ ( 203) 483 112.2 7.7e-23 gi|67678031|gb|AAH97949.1| CD40 molecule, TNF rece ( 289) 484 112.5 8.5e-23 gi|62901357|sp|Q7YRL5.1|TNR5_CANFA Tumor necrosis ( 274) 474 110.4 3.6e-22 gi|18447759|gb|AAL68402.1| membrane protein CD40 [ ( 277) 472 109.9 4.9e-22 gi|13016730|emb|CAC29427.1| CD40 type II isoform [ ( 203) 460 107.2 2.3e-21 gi|189039951|sp|Q28203.3|TNR5_BOVIN Tumor necrosis ( 280) 456 106.5 5.3e-21 gi|13400108|gb|AAF43717.2| CD40 protein [Rattus no ( 169) 453 105.7 5.7e-21 gi|1480643|gb|AAC48710.1| membrane protein CD40 ( 269) 453 105.9 8e-21 gi|76633693|ref|XP_581509.2| PREDICTED: similar to ( 280) 453 105.9 8.3e-21 gi|149042895|gb|EDL96469.1| tumor necrosis factor ( 204) 445 104.0 2.2e-20 gi|149037236|gb|EDL91736.1| similar to Tumor necro ( 452) 440 103.3 8e-20 >>gi|62089110|dbj|BAD92999.1| tumor necrosis factor rece (321 aa) initn: 2273 init1: 2273 opt: 2273 Z-score: 2632.1 bits: 495.3 E(): 5.8e-138 Smith-Waterman score: 2273; 100.000% identity (100.000% similar) in 321 aa overlap (1-321:1-321) 10 20 30 40 50 60 bj0035 GSRARWATETAEAAAPASLPRAMAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GSRARWATETAEAAAPASLPRAMAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEK 10 20 30 40 50 60 70 80 90 100 110 120 bj0035 HYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 HYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKAL 70 80 90 100 110 120 130 140 150 160 170 180 bj0035 VAVVAGNSTTPRRCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VAVVAGNSTTPRRCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGY 130 140 150 160 170 180 190 200 210 220 230 240 bj0035 FSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFIS 190 200 210 220 230 240 250 260 270 280 290 300 bj0035 SGQVMNFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SGQVMNFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGP 250 260 270 280 290 300 310 320 bj0035 EGLREPEKASRPVQEQGGAKA ::::::::::::::::::::: gi|620 EGLREPEKASRPVQEQGGAKA 310 320 >>gi|19924309|sp|Q9Y6Q6|TNR11_HUMAN Tumor necrosis facto (616 aa) initn: 1502 init1: 1502 opt: 1502 Z-score: 1737.1 bits: 330.6 E(): 4.1e-88 Smith-Waterman score: 1502; 100.000% identity (100.000% similar) in 205 aa overlap (23-227:1-205) 10 20 30 40 50 60 bj0035 GSRARWATETAEAAAPASLPRAMAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEK :::::::::::::::::::::::::::::::::::::: gi|199 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEK 10 20 30 70 80 90 100 110 120 bj0035 HYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 HYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKAL 40 50 60 70 80 90 130 140 150 160 170 180 bj0035 VAVVAGNSTTPRRCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 VAVVAGNSTTPRRCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGY 100 110 120 130 140 150 190 200 210 220 230 240 bj0035 FSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFIS ::::::::::::::::::::::::::::::::::::::::::::::: gi|199 FSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNEPHVYLPGLIILL 160 170 180 190 200 210 250 260 270 280 290 300 bj0035 SGQVMNFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGP gi|199 LFASVALVAAIIFGVCYRKKGKALTANLWHWINEACGRLSGDKESSGDSCVSTHTANFGQ 220 230 240 250 260 270 >>gi|114673399|ref|XP_523949.2| PREDICTED: tumor necrosi (617 aa) initn: 1889 init1: 1497 opt: 1497 Z-score: 1731.3 bits: 329.5 E(): 8.6e-88 Smith-Waterman score: 1497; 99.512% identity (100.000% similar) in 205 aa overlap (23-227:1-205) 10 20 30 40 50 60 bj0035 GSRARWATETAEAAAPASLPRAMAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEK :::::::::::::::::::::::::::::::::::::: gi|114 MAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEK 10 20 30 70 80 90 100 110 120 bj0035 HYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 HYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKAL 40 50 60 70 80 90 130 140 150 160 170 180 bj0035 VAVVAGNSTTPRRCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VAVVAGNSTTPRRCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGY 100 110 120 130 140 150 190 200 210 220 230 240 bj0035 FSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFIS :::::::::::::::::::::::::::::::::.::::::::::::: gi|114 FSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDVVCSSSLPARKPPNEPHVYLPGLIILL 160 170 180 190 200 210 250 260 270 280 290 300 bj0035 SGQVMNFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGP gi|114 LFASVALVAAIIFGVCYRKKGKALTANLWHWINEACGRLSGDKESSGDSCVSTHTADFGQ 220 230 240 250 260 270 >>gi|17512456|gb|AAH19185.1| Tnfrsf11a protein [Mus musc (625 aa) initn: 1670 init1: 1193 opt: 1238 Z-score: 1431.8 bits: 274.1 E(): 4.2e-71 Smith-Waterman score: 1238; 79.512% identity (91.707% similar) in 205 aa overlap (23-226:1-205) 10 20 30 40 50 bj0035 GSRARWATETAEAAAPASLPRAMAPRARRRRPLFA-LLLLCALLARLQVALQIAPPCTSE ::::::::: : : :: ::.::. :::.::..::::.: gi|175 MAPRARRRRQLPAPLLALCVLLVPLQVTLQVTPPCTQE 10 20 30 60 70 80 90 100 110 bj0035 KHYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKA .:::::::::..::::::.::::: ::::::::::::::::.::::::::::::::.::: gi|175 RHYEHLGRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNEEDKCLLHKVCDAGKA 40 50 60 70 80 90 120 130 140 150 160 170 bj0035 LVAVVAGNSTTPRRCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAG :::: :: :.::::::::::::..::::::::::::::.:::::::::::::: ::: : gi|175 LVAVDPGNHTAPRRCACTAGYHWNSDCECCRRNTECAPGFGAQHPLQLNKDTVCTPCLLG 100 110 120 130 140 150 180 190 200 210 220 230 bj0035 YFSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFI .:::.:::::::.::::::.::: :.:: .::.:::::. :.:: gi|175 FFSDVFSSTDKCKPWTNCTLLGKLEAHQGTTESDVVCSSSMTLRRPPKEAQAYLPSLIVL 160 170 180 190 200 210 240 250 260 270 280 290 bj0035 SSGQVMNFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGG gi|175 LLFISVVVVAAIIFGVYYRKGGKALTANLWNWVNDACSSLSGNKESSGDRCAGSHSATSS 220 230 240 250 260 270 >>gi|17380323|sp|O35305|TNR11_MOUSE Tumor necrosis facto (625 aa) initn: 1664 init1: 1193 opt: 1238 Z-score: 1431.8 bits: 274.1 E(): 4.2e-71 Smith-Waterman score: 1238; 79.512% identity (91.707% similar) in 205 aa overlap (23-226:1-205) 10 20 30 40 50 bj0035 GSRARWATETAEAAAPASLPRAMAPRARRRRPLFA-LLLLCALLARLQVALQIAPPCTSE ::::::::: : : :: ::.::. :::.::..::::.: gi|173 MAPRARRRRQLPAPLLALCVLLVPLQVTLQVTPPCTQE 10 20 30 60 70 80 90 100 110 bj0035 KHYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKA .:::::::::..::::::.::::: ::::::::::::::::.::::::::::::::.::: gi|173 RHYEHLGRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNEEDKCLLHKVCDAGKA 40 50 60 70 80 90 120 130 140 150 160 170 bj0035 LVAVVAGNSTTPRRCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAG :::: :: :.::::::::::::..::::::::::::::.:::::::::::::: ::: : gi|173 LVAVDPGNHTAPRRCACTAGYHWNSDCECCRRNTECAPGFGAQHPLQLNKDTVCTPCLLG 100 110 120 130 140 150 180 190 200 210 220 230 bj0035 YFSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFI .:::.:::::::.::::::.::: :.:: .::.:::::. :.:: gi|173 FFSDVFSSTDKCKPWTNCTLLGKLEAHQGTTESDVVCSSSMTLRRPPKEAQAYLPSLIVL 160 170 180 190 200 210 240 250 260 270 280 290 bj0035 SSGQVMNFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGG gi|173 LLFISVVVVAAIIFGVYYRKGGKALTANLWNWVNDACSSLSGNKESSGDRCAGSHSATSS 220 230 240 250 260 270 >>gi|109497747|ref|XP_573424.2| PREDICTED: similar to tu (633 aa) initn: 1630 init1: 1160 opt: 1201 Z-score: 1388.9 bits: 266.2 E(): 1e-68 Smith-Waterman score: 1201; 78.537% identity (88.780% similar) in 205 aa overlap (23-226:1-205) 10 20 30 40 50 bj0035 GSRARWATETAEAAAPASLPRAMAPRARRRRPLFA-LLLLCALLARLQVALQIAPPCTSE ::::::::: . : :: ::.:: :::.::.. :::.: gi|109 MAPRARRRRQFPAPLLALCVLLLPLQVTLQVTLPCTQE 10 20 30 60 70 80 90 100 110 bj0035 KHYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKA .:::::::::..::::::.::::: ::::::::::::::::.::::::::::::::.::: gi|109 RHYEHLGRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNEEDKCLLHKVCDAGKA 40 50 60 70 80 90 120 130 140 150 160 170 bj0035 LVAVVAGNSTTPRRCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAG :::: :: :.::::::::::::. ::::::::::::::.::::::::: :::: ::: : gi|109 LVAVDPGNHTAPRRCACTAGYHWNADCECCRRNTECAPGFGAQHPLQLNVDTVCTPCLLG 100 110 120 130 140 150 180 190 200 210 220 230 bj0035 YFSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFI .:::.:::::::.:::::: ::: :.:: .::.:::::: ::: gi|109 FFSDVFSSTDKCKPWTNCTVLGKMEAHQGTTESDVVCSSSLTLIKPPKEAQVYLPSLIVL 160 170 180 190 200 210 240 250 260 270 280 290 bj0035 SSGQVMNFKGDIIVVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGG gi|109 LLFISVVVVAAIVFSIYYRKGGKTLTANLWNWVNDACSSLSGNKESSGDHCVGSHSANSS 220 230 240 250 260 270 >>gi|149721219|ref|XP_001490340.1| PREDICTED: similar to (614 aa) initn: 1204 init1: 1169 opt: 1169 Z-score: 1352.1 bits: 259.4 E(): 1.1e-66 Smith-Waterman score: 1169; 83.333% identity (94.444% similar) in 180 aa overlap (48-227:80-259) 20 30 40 50 60 70 bj0035 SLPRAMAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGKY :..::.::: ::.::::.:::::::::::: gi|149 TASSTCQCSQAVASGVALLPNSPKKNLLVYVTFQITPPCGSERHYEHFGRCCNKCEPGKY 50 60 70 80 90 100 80 90 100 110 120 130 bj0035 MSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACT :::::::::.:::::::::::::.:::::::::::::::::::::: :: :.::::::: gi|149 MSSKCTTTSESVCLPCGPDEYLDTWNEEDKCLLHKVCDTGKALVAVEPGNRTAPRRCACT 110 120 130 140 150 160 140 150 160 170 180 190 bj0035 AGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNC ::::::.::.:::::.:::::.::: :.::::::::.::: ::::::::::.::.::::: gi|149 AGYHWSEDCDCCRRNAECAPGFGAQPPVQLNKDTVCQPCLLGYFSDAFSSTEKCKPWTNC 170 180 190 200 210 220 200 210 220 230 240 250 bj0035 TFLGKRVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFISSGQVMNFKGDIIVVYVS :.::: ::::.:::.:::::::. :::: gi|149 TILGKMEAHHGTDKSDVVCSSSLPSMKPPNEPQIYLPSLIILLLFISVALVAAVIFGVYY 230 240 250 260 270 280 >>gi|73945884|ref|XP_541077.2| PREDICTED: similar to Tum (629 aa) initn: 1381 init1: 1155 opt: 1155 Z-score: 1335.8 bits: 256.4 E(): 9.2e-66 Smith-Waterman score: 1155; 81.667% identity (94.444% similar) in 180 aa overlap (47-226:21-200) 20 30 40 50 60 70 bj0035 ASLPRAMAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPGK ::..::.:::: :.::::.::::::::::: gi|739 MVDIRTKICRREEEGTGRGWQVTFQITPPCTRERHYEHFGRCCNKCEPGK 10 20 30 40 50 80 90 100 110 120 130 bj0035 YMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCAC ::::::::::.:::::::::::::.:::::::::::::::::::::: :: :.:::::: gi|739 YMSSKCTTTSESVCLPCGPDEYLDTWNEEDKCLLHKVCDTGKALVAVEPGNRTAPRRCAC 60 70 80 90 100 110 140 150 160 170 180 190 bj0035 TAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTN ::::::: ::.:::::.:::::.:: ::.:::::::::::: :::::.::::.::.:::: gi|739 TAGYHWSADCDCCRRNAECAPGFGALHPVQLNKDTVCKPCLLGYFSDVFSSTEKCKPWTN 120 130 140 150 160 170 200 210 220 230 240 250 bj0035 CTFLGKRVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFISSGQVMNFKGDIIVVYV :..::.. .:::.:::.:::::::. ::: gi|739 CSILGEKEVRHGTDKSDVVCSSSLPSTKPPKEPQIYLPSLIILLLFISVALVAAVIFGVY 180 190 200 210 220 230 >>gi|148707924|gb|EDL39871.1| tumor necrosis factor rece (602 aa) initn: 1617 init1: 1146 opt: 1146 Z-score: 1325.6 bits: 254.4 E(): 3.4e-65 Smith-Waterman score: 1146; 80.110% identity (93.370% similar) in 181 aa overlap (46-226:2-182) 20 30 40 50 60 70 bj0035 PASLPRAMAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKCEPG .::.::..::::.:.:::::::::..:::: gi|148 SFQVTLQVTPPCTQERHYEHLGRCCSRCEPG 10 20 30 80 90 100 110 120 130 bj0035 KYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCA ::.::::: ::::::::::::::::.::::::::::::::.::::::: :: :.::::: gi|148 KYLSSKCTPTSDSVCLPCGPDEYLDTWNEEDKCLLHKVCDAGKALVAVDPGNHTAPRRCA 40 50 60 70 80 90 140 150 160 170 180 190 bj0035 CTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWT :::::::..::::::::::::::.:::::::::::::: ::: :.:::.:::::::.::: gi|148 CTAGYHWNSDCECCRRNTECAPGFGAQHPLQLNKDTVCTPCLLGFFSDVFSSTDKCKPWT 100 110 120 130 140 150 200 210 220 230 240 250 bj0035 NCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFISSGQVMNFKGDIIVVY :::.::: :.:: .::.:::::. :.:: gi|148 NCTLLGKLEAHQGTTESDVVCSSSMTLRRPPKEAQAYLPSLIVLLLFISVVVVAAIIFGV 160 170 180 190 200 210 260 270 280 290 300 310 bj0035 VSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLREPEKASRPVQE gi|148 YYRKGGKALTANLWNWVNDACSSLSGNKESSGDRCAGSHSATSSQQEVCEGILLMTREEK 220 230 240 250 260 270 >>gi|76669993|ref|XP_609364.2| PREDICTED: similar to rec (673 aa) initn: 1469 init1: 990 opt: 1007 Z-score: 1164.3 bits: 224.7 E(): 3.3e-56 Smith-Waterman score: 1007; 71.351% identity (87.568% similar) in 185 aa overlap (43-227:85-268) 20 30 40 50 60 70 bj0035 AAAPASLPRAMAPRARRRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRCCNKC .. . :.:::.::::::..:::::.::.:: gi|766 LFAWPGGEWTDHTVDDTEVGPLLYVVGQKQFSTFWVTLQITPPCTSERYYEHLGQCCKKC 60 70 80 90 100 110 80 90 100 110 120 130 bj0035 EPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPR ::: ::::::::::.::::::: :::::.:::::::::::::: :::: :: :: :.:: gi|766 EPGTYMSSKCTTTSESVCLPCGLDEYLDTWNEEDKCLLHKVCDPGKALRAVEPGNRTAPR 120 130 140 150 160 170 140 150 160 170 180 190 bj0035 RCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCR :::::::::::.::.:: ::.::: :.::..:.::::::::.:: .:::::. :.:. :: gi|766 RCACTAGYHWSEDCRCCTRNAECARGFGARRPVQLNKDTVCEPCPSGYFSDTVSATETCR 180 190 200 210 220 230 200 210 220 230 240 250 bj0035 PWTNCTFLGKRVEHHGTEKSDAVCSSSLPARKPPNGNVTGNSNSTFISSGQVMNFKGDII ::::::.:: .:::.: :.::: ::. .: : gi|766 PWTNCTILGGTEVRHGTDKLDVVCSP-LPSANPSNEPQVYLPSLIILLLFMSVALVAAVI 240 250 260 270 280 290 260 270 280 290 300 310 bj0035 VVYVSQTSQEGAAAAAEPMGRPVQEETLARRDSFAGNGPRFPDPCGGPEGLREPEKASRP gi|766 FGVYYRKKGKALTANLWHWVNEACGRLNGNKESAGNSFSCTHVEAASAREVCEGVFLLTL 300 310 320 330 340 350 321 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 06:12:48 2008 done: Thu Aug 7 06:15:21 2008 Total Scan time: 749.060 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]